Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_P24
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0412 - 23235670-23236512,23236804-23237838                       29   4.5  
01_06_1353 + 36533795-36533827,36533904-36533993,36535595-365356...    28   7.8  

>11_06_0412 - 23235670-23236512,23236804-23237838
          Length = 625

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 113 FLCYVWNYHDIVYCACMFYKLVSVIAYHFKFEIHIFL 3
           FL  +W Y DI  C  MF +     +  FK+E+  F+
Sbjct: 333 FLVVLWLYKDISKCPTMFMRSFGFCSTMFKWEMTPFI 369


>01_06_1353 +
           36533795-36533827,36533904-36533993,36535595-36535681,
           36535775-36535843,36536472-36536552,36536641-36536712,
           36536814-36536874,36536960-36537062,36537223-36537318,
           36537394-36537440,36538052-36538299
          Length = 328

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 149 KNHIKSSFFFCIFLCYV-WNYHDIVYCACMFYKLV 48
           K ++  S F  IF+ ++ W++H  +Y +  FY ++
Sbjct: 76  KGYVSESVFTFIFISFLLWSFHPFIYHSKRFYTVL 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,826,325
Number of Sequences: 37544
Number of extensions: 233508
Number of successful extensions: 375
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)