Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_P24
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.87 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.87 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   6.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   6.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.1  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   8.1  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   8.1  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 167 LFIFKFKNHIKS-SFFFCIFLCYVWNYHDIVYCACMFYKLVSV 42
           L +FK     K   +  C+  C+   Y+ I+    +FY LVS+
Sbjct: 88  LGVFKIAPIFKGIGYATCVLSCWTNIYYIIILAWALFYLLVSL 130


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 167 LFIFKFKNHIKS-SFFFCIFLCYVWNYHDIVYCACMFYKLVSV 42
           L +FK     K   +  C+  C+   Y+ I+    +FY LVS+
Sbjct: 141 LGVFKIAPIFKGIGYATCVLSCWTNIYYIIILAWALFYLLVSL 183


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 157 LNSKTILKVRFSFVSFCVMFGITMILY 77
           + + ++L+   S VS CV+FG+  +L+
Sbjct: 1   MRASSVLQAE-SDVSSCVIFGVLFVLF 26


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 157 LNSKTILKVRFSFVSFCVMFGITMILY 77
           + + ++L+   S VS CV+FG+  +L+
Sbjct: 1   MRASSVLQAE-SDVSSCVIFGVLFVLF 26


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 485 IYFITVFFYNSPYSETV 435
           +YF  VF YN P  E++
Sbjct: 668 MYFKDVFIYNRPNEESM 684


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 485 IYFITVFFYNSPYSETV 435
           +YF  VF YN P  E++
Sbjct: 668 MYFKDVFIYNRPNEESM 684


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 133 VRFSFVSFCVMFGITMIL 80
           V F    FC++FG  MI+
Sbjct: 207 VLFEIFPFCIVFGSDMIV 224


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 35  MRSHLRVYRTYMRNIQYHGNSKHNTKRYKRK 127
           ++SH  VY+    N  Y     H+ K + RK
Sbjct: 36  LKSHSNVYQYRCANCTYATKYCHSLKLHLRK 66


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -1

Query: 98  WNYHDIVYC 72
           W+Y+D+ YC
Sbjct: 109 WSYNDVKYC 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,768
Number of Sequences: 438
Number of extensions: 3074
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)