Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_P23
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    30   0.32 
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ...    28   1.3  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    27   3.9  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    26   5.2  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    26   6.9  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   6.9  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    25   9.1  
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac...    25   9.1  

>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 22/87 (25%), Positives = 38/87 (43%)
 Frame = -2

Query: 371 VISKLDELNLWKIDGKALLQKFIPMESNGRVLHKCTCVYSGWNVDNRDNYYPITEILDRN 192
           V S+L EL++WK   K +     P+ESN  +  +          ++ DN  P +E+  + 
Sbjct: 232 VDSELTELDIWKNPKKTMFLPVKPLESNSALNSQNEHTEVQKKSNSIDNLTPSSELFRKR 291

Query: 191 PRTDSQGNMCSIRLK*SYQS*RQVNXR 111
            R ++     S+  K    + R  N R
Sbjct: 292 SRDNNLSRESSVSSKHLDYNSRNYNKR 318


>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 343

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 334 LMAKHYYRNLSQWNQMEEFYTNVHVCILGGMLTTVTIIT 218
           L+ +H Y NLSQ   +E+F   +     GG L   + +T
Sbjct: 24  LLEQHIYSNLSQCESLEDFRLQLSSTDYGGFLANQSKLT 62


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 716 EPEEF-QDSGEDWTPDADSNEPASRTSRKRVSKPPVN 609
           + EEF +DS      + D+NEP+++ + K V +  VN
Sbjct: 239 DSEEFSEDSDNSSEENKDTNEPSTKDAEKTVPEDVVN 275


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 749 EEDSDGSGQGAEPEEFQDSGE-DWTPDAD 666
           EE+ D  G+G E EE +D G+ D   D D
Sbjct: 187 EEEFDEEGEGDEEEEEEDDGDGDGEGDGD 215


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = -2

Query: 761 LKLXEEDSDGSGQGAEPEE---FQDSGEDWTPDADSNEPASRTSRKRVSKPPVNNTKKKR 591
           L L EE+S+ S +  + ++    +D G +   D D         +K+ SK   +  KK R
Sbjct: 136 LSLDEEESESSEKSKKKKKKSKSKDDGSEALDDGDIESSEKDKKKKKKSKENDDAPKKDR 195

Query: 590 K 588
           K
Sbjct: 196 K 196


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 323 LCHQFSTSSVHQVLILQYL 379
           LCHQ S+S  +Q L +QYL
Sbjct: 555 LCHQQSSSFTNQDLAIQYL 573


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 746 EDSDGSGQGAEPEEFQDSGEDWTPDADSNEPAS 648
           +D D S Q A  EE+ D  +D   D D NE ++
Sbjct: 231 QDDDSSEQTAAFEEYDDDDDD---DVDDNEQSN 260


>SPAC11D3.03c |||meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 77  VKVPSKSLFSQVIPD 33
           VK+P KS+FS V+P+
Sbjct: 67  VKIPQKSIFSIVVPE 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,931,719
Number of Sequences: 5004
Number of extensions: 57870
Number of successful extensions: 201
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)