Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_P21
(759 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 241 1e-64
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 122 4e-29
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 91 2e-19
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 87 3e-18
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 86 6e-18
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 86 6e-18
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 84 2e-17
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 84 2e-17
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 82 7e-17
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 81 2e-16
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 79 5e-16
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 79 5e-16
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 79 9e-16
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 77 4e-15
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 76 6e-15
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 72 8e-14
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 69 5e-13
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 65 9e-12
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 59 8e-10
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 56 7e-09
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 53 5e-08
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 49 8e-07
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 41 2e-04
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 37 0.004
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 31 0.13
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa... 29 0.72
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 29 0.95
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 29 0.95
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 26 6.7
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 26 6.7
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub... 25 8.9
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 241 bits (589), Expect = 1e-64
Identities = 123/232 (53%), Positives = 155/232 (66%)
Frame = -1
Query: 756 ATMTKKVQKLQRASLQDPVKVEVSTKYQTVDKLMQSYIFIPVKFKDVYLVHILNEMAGNS 577
ATMT KV+KLQRASL PV+V VS+K+ TVD L+Q Y+F P K KD YLV+++NE+AGNS
Sbjct: 228 ATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKHKDTYLVYLVNELAGNS 287
Query: 576 FIVFVSTXXXXXXXXXXXXXXXXXAVPLHGQMSQNKRLAALNKFKSKSRSVLICTDVASR 397
I+F T A+PLHGQ+SQ+ RL ALNKFKS +RS L+ TDVA+R
Sbjct: 288 IIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAAR 347
Query: 396 GLDIPHVDVVINLDIPLHSKDYIHRVXXXXXXXXXGKAITFVTQYDVELYQRIEQLIGKQ 217
GLDIP VDVVIN DIP SK YIHRV GK+I VTQYD+E + RIE IGK+
Sbjct: 348 GLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLEPFLRIEATIGKK 407
Query: 216 LPLYKTEESEVMVLQERVAEAQRLTRIEMKELEDKKSTKGKKRGADSDDDTE 61
+ Y+ ++ V +L ERV EAQR I+MKE+ D++ +KGK DD +
Sbjct: 408 MQEYEIDKEGVFLLSERVGEAQREAIIQMKEIHDRRKSKGKLHTKRKRDDLD 459
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 122 bits (295), Expect = 4e-29
Identities = 77/233 (33%), Positives = 130/233 (55%), Gaps = 10/233 (4%)
Frame = -1
Query: 756 ATMTKKVQKLQ---RASLQDPVKV-EVSTKYQTVDK-LMQSYIFIPVKFKDVYLVHILN- 595
AT+T +++L+ + + + P+ + EV T +V L QSYIF+ + ++ YLVH+L
Sbjct: 194 ATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQVREAYLVHLLTI 253
Query: 594 -EMAGNSFIVFVSTXXXXXXXXXXXXXXXXXAVPLHGQMSQNKRLAALNKFKSKSRSVLI 418
E A S I+FV+ LH +M Q +R+ +L +F++++ +L+
Sbjct: 254 PENAKKSAIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILV 313
Query: 417 CTDVASRGLDIPHVDVVINLDIPLHSKDYIHRVXXXXXXXXXGKAITFVTQYDVELYQRI 238
TDVASRGLDIP V +VIN D+P DYIHRV G++I+ VT+ DV+L I
Sbjct: 314 ATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERDVDLVHAI 373
Query: 237 EQLIGKQLPLYK-TEESEVMVLQERVAEAQRLTRIEM--KELEDKKSTKGKKR 88
E +G +L Y+ E++++ + V +A+R +EM + +++ + +KR
Sbjct: 374 EDRVGTKLSEYEHVSENKMLEYIKEVTDAKRQASLEMIDRGFGERRQKRNEKR 426
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 91.1 bits (216), Expect = 2e-19
Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 3/225 (1%)
Frame = -1
Query: 756 ATMTKKVQKLQRASLQDPVKVEVSTKYQTVDKLMQSYIFI-PVK--FKDVYLVHILNEMA 586
ATMT KV L R SL PV+V V K T L Q ++ + P + + L+++ E+
Sbjct: 444 ATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYLCKELF 503
Query: 585 GNSFIVFVSTXXXXXXXXXXXXXXXXXAVPLHGQMSQNKRLAALNKFKSKSRSVLICTDV 406
I+F + A +HG +SQ +R+ AL F+ + L+ TDV
Sbjct: 504 HRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDV 563
Query: 405 ASRGLDIPHVDVVINLDIPLHSKDYIHRVXXXXXXXXXGKAITFVTQYDVELYQRIEQLI 226
ASRG+DI ++VVIN + P + Y+HRV G+AIT + D ++ + + +
Sbjct: 564 ASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVLKGVFKNS 623
Query: 225 GKQLPLYKTEESEVMVLQERVAEAQRLTRIEMKELEDKKSTKGKK 91
Q + +++ E + L + K L+++K + K
Sbjct: 624 SAQNTKLVNRNLDFNKVEKFGKEIEELEPVVQKVLDEEKQERELK 668
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 86.6 bits (205), Expect = 3e-18
Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 1/176 (0%)
Frame = -1
Query: 756 ATMTKKVQKLQRASLQDPVKVEVSTKYQTVDKLMQSYIFIPVK-FKDVYLVHILNEMAGN 580
AT+ + V ++ +PV++ V T++ L Q +I + + +K L + + +
Sbjct: 202 ATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTIT 261
Query: 579 SFIVFVSTXXXXXXXXXXXXXXXXXAVPLHGQMSQNKRLAALNKFKSKSRSVLICTDVAS 400
++F ++ +HG+M Q +R A + F+ + VLICTD+ +
Sbjct: 262 QAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWA 321
Query: 399 RGLDIPHVDVVINLDIPLHSKDYIHRVXXXXXXXXXGKAITFVTQYDVELYQRIEQ 232
RG+D+ V +VIN D+P + ++YIHR+ G AI FVT DV + + IEQ
Sbjct: 322 RGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDIEQ 377
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 85.8 bits (203), Expect = 6e-18
Identities = 48/176 (27%), Positives = 89/176 (50%), Gaps = 1/176 (0%)
Frame = -1
Query: 756 ATMTKKVQKLQRASLQDPVKVEVSTKYQTVDKLMQSYIFIPVK-FKDVYLVHILNEMAGN 580
ATM + V ++ ++DP+++ V T++ + Q Y+ + + +K L + +
Sbjct: 200 ATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYETVTVT 259
Query: 579 SFIVFVSTXXXXXXXXXXXXXXXXXAVPLHGQMSQNKRLAALNKFKSKSRSVLICTDVAS 400
++F +T +HG M Q +R +++F++ S +LI TD+ +
Sbjct: 260 QAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLA 319
Query: 399 RGLDIPHVDVVINLDIPLHSKDYIHRVXXXXXXXXXGKAITFVTQYDVELYQRIEQ 232
RG+D+ V +VIN D+P + ++YIHR+ G +I FVT DV + + IEQ
Sbjct: 320 RGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQ 375
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 85.8 bits (203), Expect = 6e-18
Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 1/178 (0%)
Frame = -1
Query: 756 ATMTKKVQKLQRASLQDPVKVEVSTKYQTVDKLMQSYIFIPVKFKDVYLVHILNEMAGNS 577
AT + +Q L R L+D V + V T + + Q + + K YL+ IL+ +
Sbjct: 372 ATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKVVHVEDSEKRSYLLDILHTLPPEG 431
Query: 576 F-IVFVSTXXXXXXXXXXXXXXXXXAVPLHGQMSQNKRLAALNKFKSKSRSVLICTDVAS 400
++FV T A +HG +Q +R AL F+S S+++ T VAS
Sbjct: 432 LTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVAS 491
Query: 399 RGLDIPHVDVVINLDIPLHSKDYIHRVXXXXXXXXXGKAITFVTQYDVELYQRIEQLI 226
RGLDIP+V VIN D+P DY+HR+ G+A+ F + + + + + +L+
Sbjct: 492 RGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAKELIELL 549
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 84.2 bits (199), Expect = 2e-17
Identities = 58/173 (33%), Positives = 83/173 (47%), Gaps = 7/173 (4%)
Frame = -1
Query: 756 ATMTKKVQKLQRASLQDPVKVEVSTKYQTVDKLMQSYIFI--PVKFKDVYLVHILNEMAG 583
AT + V+ L L+DPVK+ + + + + + I + K+ L ++L +
Sbjct: 353 ATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLS 412
Query: 582 NS-----FIVFVSTXXXXXXXXXXXXXXXXXAVPLHGQMSQNKRLAALNKFKSKSRSVLI 418
+ ++FV V +HG MSQ RL ALN FKS VL+
Sbjct: 413 SGGKDDKILIFV-LYKKEAARVEGTLARKYNVVGIHGDMSQGARLQALNDFKSGKCPVLV 471
Query: 417 CTDVASRGLDIPHVDVVINLDIPLHSKDYIHRVXXXXXXXXXGKAITFVTQYD 259
TDVA+RGLDIP V +VIN+ PL +DY+HR+ G AITF T D
Sbjct: 472 ATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQD 524
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 83.8 bits (198), Expect = 2e-17
Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 2/190 (1%)
Frame = -1
Query: 756 ATMTKKVQKLQRASLQDPVKVEVSTKYQTVDKLMQSYIFIPVKFKDVYLVHILNEMAGNS 577
AT+ +V L ++ L +PV + + Q VD++ Q I K V + E S
Sbjct: 457 ATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDDSKKWRRVEEILESNRFS 516
Query: 576 --FIVFVSTXXXXXXXXXXXXXXXXXAVPLHGQMSQNKRLAALNKFKSKSRSVLICTDVA 403
I+FV+ AV LHG SQ +R A+ + ++K+ +L+ TD+A
Sbjct: 517 PPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIA 576
Query: 402 SRGLDIPHVDVVINLDIPLHSKDYIHRVXXXXXXXXXGKAITFVTQYDVELYQRIEQLIG 223
RG+DIP+V +V+N ++ +DY HR+ G AITF+ D ++Y + L+
Sbjct: 577 GRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPEDTDVYYDLRVLLS 636
Query: 222 KQLPLYKTEE 193
+ + +E
Sbjct: 637 RSAKAHIPDE 646
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 82.2 bits (194), Expect = 7e-17
Identities = 50/149 (33%), Positives = 74/149 (49%), Gaps = 3/149 (2%)
Frame = -1
Query: 756 ATMTKKVQKLQRASLQD-PVKVEVST--KYQTVDKLMQSYIFIPVKFKDVYLVHILNEMA 586
AT T KV+ L R SL+ P+ V V + TV+ L Q Y+ + + + L L
Sbjct: 276 ATQTTKVEDLARISLKPGPLYVNVDSGKPTSTVEGLEQGYVVVDSDKRFLLLFSFLKRNL 335
Query: 585 GNSFIVFVSTXXXXXXXXXXXXXXXXXAVPLHGQMSQNKRLAALNKFKSKSRSVLICTDV 406
IVF+S+ + LHG+ Q +R +F + + +L+CT+V
Sbjct: 336 KKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNV 395
Query: 405 ASRGLDIPHVDVVINLDIPLHSKDYIHRV 319
A+RGLDIP VD ++ D P +DYIHRV
Sbjct: 396 AARGLDIPAVDWIVQYDPPDDPRDYIHRV 424
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 81.0 bits (191), Expect = 2e-16
Identities = 45/177 (25%), Positives = 91/177 (51%), Gaps = 2/177 (1%)
Frame = -1
Query: 756 ATMTKKVQKLQRASLQDPVKVEVSTKYQ-TVDKLMQSYIFIPVKFKDVYLVHILNEMAGN 580
AT++ +++ + + +Q+P+++ V + + T+ L Q Y+ + K K+ + +L+ + N
Sbjct: 237 ATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKNRKINDLLDSLEFN 296
Query: 579 SFIVFVSTXXXXXXXXXXXXXXXXXAVPLHGQMSQNKRLAALNKFKSKSRSVLICTDVAS 400
++FV + ++ +HG + Q +R+ FK + + + TDV
Sbjct: 297 QVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFG 356
Query: 399 RGLDIPHVDVVINLDIPLHSKDYIHRVXXXXXXXXXGKAITF-VTQYDVELYQRIEQ 232
RG+DI V++VIN D+P Y+HRV G AITF ++ D ++ +I++
Sbjct: 357 RGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQE 413
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 79.4 bits (187), Expect = 5e-16
Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 5/178 (2%)
Frame = -1
Query: 756 ATMTKKVQKLQRASLQDPVKVEVSTKYQTVDKLMQSYIFIPVKFKDVYLVHILNEMAGNS 577
AT+ +V++L + DP+++ V K D + Q +F+ D + IL +M N
Sbjct: 229 ATIPSRVEELAKVVTVDPIRIIVGLKDAATDSIDQRLLFVG---SDTSKIVILRQMISNG 285
Query: 576 -----FIVFVSTXXXXXXXXXXXXXXXXXAVPLHGQMSQNKRLAALNKFKSKSRSVLICT 412
++FV +HG++ Q KR AL KF+ VLI T
Sbjct: 286 ELKPRVVIFVQDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIAT 345
Query: 411 DVASRGLDIPHVDVVINLDIPLHSKDYIHRVXXXXXXXXXGKAITFVTQYDVELYQRI 238
D+ +RG+D V +VIN D P YIHR+ G+A+TF T+ D E + I
Sbjct: 346 DLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYIKLI 403
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 79.4 bits (187), Expect = 5e-16
Identities = 55/223 (24%), Positives = 104/223 (46%), Gaps = 8/223 (3%)
Frame = -1
Query: 705 PVKVEVSTKYQTVDKLMQSYIFIPVKFKDVYLVHILNEMAGNSFIVFVSTXXXXXXXXXX 526
P ++ + + ++++ I KD+YL +++ G + +VF +
Sbjct: 350 PKFLDANPQSAVASRVLEGLIECAPAEKDLYLYYLIMRYPGKT-MVFANGIEDIKRITPF 408
Query: 525 XXXXXXXAVPLHGQMSQNKRLAALNKFKSKSRSVLICTDVASRGLDIPHVDVVINLDIPL 346
+ PLH Q+ Q KRL +L KFK+ + VL+CTDVA+RG+DIP V VI+ +P
Sbjct: 409 LNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPH 468
Query: 345 HSKDYIHRVXXXXXXXXXGKAITFVTQYDVELYQRIEQLIGKQLPL---YKTEESEVMVL 175
+ Y+HR G +I ++ +R+ + K++ + + S + +L
Sbjct: 469 TADMYVHRSGRTARANEDGVSILMCGPKELSQLKRLCYRLKKKIETFINFPVDMSILDIL 528
Query: 174 QERVAEAQRLTRIEMKE-----LEDKKSTKGKKRGADSDDDTE 61
+ RV A ++ + K+ E + ++ G +S DD +
Sbjct: 529 KTRVVLAHKIVNLTRKDGRVGREEAWLKSMAQELGVESSDDED 571
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 78.6 bits (185), Expect = 9e-16
Identities = 57/178 (32%), Positives = 76/178 (42%), Gaps = 4/178 (2%)
Frame = -1
Query: 756 ATMTKKVQKLQRASLQDP--VKVEVSTKYQTVDKLMQSYIFIPVKFKDVYLVHILNEMAG 583
AT TK V+ L R SLQ+P + V + T L Q Y+ +P+ K L +
Sbjct: 224 ATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLDILFGFIRTHLK 283
Query: 582 NSFIVFVSTXXXXXXXXXXXXXXXXXA--VPLHGQMSQNKRLAALNKFKSKSRSVLICTD 409
IVF+S+ + LHG+ Q R KF S VL CTD
Sbjct: 284 FKTIVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTD 343
Query: 408 VASRGLDIPHVDVVINLDIPLHSKDYIHRVXXXXXXXXXGKAITFVTQYDVELYQRIE 235
+ +RGLD P VD VI LD P YIHRV G A+ + + +R+E
Sbjct: 344 IVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNALLLLLPSEEAFLKRLE 401
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 76.6 bits (180), Expect = 4e-15
Identities = 59/244 (24%), Positives = 110/244 (45%), Gaps = 11/244 (4%)
Frame = -1
Query: 756 ATMTKKVQKLQRASLQDPVKVEVSTKYQTVDKLMQSYIFIPVKFKDVYLVHILNEMAGNS 577
AT + ++ L R L+ PV++ V + ++ Q P + K L+ +L E+ N
Sbjct: 607 ATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPEESKFSRLLELLGELYNNQ 666
Query: 576 F----IVFVSTXXXXXXXXXXXXXXXXXAVPLHGQMSQNKRLAALNKFKSKSRSVLICTD 409
+VFV + +HG Q+ R + ++ +K+ VLI T
Sbjct: 667 LDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATS 726
Query: 408 VASRGLDIPHVDVVINLDIPLHSKDYIHRVXXXXXXXXXGKAITFVT----QYDVELYQR 241
V +RGLD+ + +V+N D P H +DY+HRV G A+TF+T +Y V++ +
Sbjct: 727 VVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAKA 786
Query: 240 I---EQLIGKQLPLYKTEESEVMVLQERVAEAQRLTRIEMKELEDKKSTKGKKRGADSDD 70
+ +Q + K+L ++ E + + A + L++ ++ + K + +
Sbjct: 787 LKMSKQPVPKELQTLASQFLEKVKAGKEKAAGGGFGGKGLSRLDETRNAERKMQRKAYGE 846
Query: 69 DTED 58
D ED
Sbjct: 847 DEED 850
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 75.8 bits (178), Expect = 6e-15
Identities = 67/221 (30%), Positives = 99/221 (44%), Gaps = 10/221 (4%)
Frame = -1
Query: 756 ATMTKKVQK-LQRASLQDPVKVEVSTKYQTVD-----KLMQSYIFIPVKFKDVYLVHILN 595
ATM V L+ A L++ V+V V+ + +D L + IP +K ++H+L
Sbjct: 193 ATMNDTVSSFLKIAGLRNSVRVSVTVTSKKIDTRTPSSLAIQSLVIPPIYKVQCMIHLLC 252
Query: 594 EMAGNSFIVFVSTXXXXXXXXXXXXXXXXXA--VPLHGQMSQNKRLAALNKFK-SKSRSV 424
+ IVF S+ V LHGQ Q+ R KFK S ++V
Sbjct: 253 TIEYEKAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQSNRSRNFEKFKKSNKKTV 312
Query: 423 LICTDVASRGLDIPHVDVVINLDIPLHSKDYIHRVXXXXXXXXXGKAITFVTQYDVELYQ 244
L TD+ASRGLDIP+VD V+ LD PL K + HR G AI + E Y+
Sbjct: 313 LFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRAGRAGVAIVLLNDGREEEYE 372
Query: 243 RIEQLIGKQLPLYKTEES-EVMVLQERVAEAQRLTRIEMKE 124
E L +++P+ + + E + L L +I K+
Sbjct: 373 --ELLRVRKVPITRIDTPIEALDLSRLKVLTHELRKIVSKD 411
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 72.1 bits (169), Expect = 8e-14
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Frame = -1
Query: 495 LHGQMSQNKRLAALNKFKSKSRS---VLICTDVASRGLDIPHVDVVINLDIPLHSKDYIH 325
LHG +SQ R + LN F S S +L+CTDVA+RGLD+P+VD+V+ D P + DY+H
Sbjct: 473 LHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLH 532
Query: 324 RVXXXXXXXXXGKAITFVTQYDVELYQRIEQLIGKQL 214
R+ G AI F+ + E ++ + +
Sbjct: 533 RIGRTARAGHNGAAIMFLLPKESEYINLLKSSVSANI 569
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 69.3 bits (162), Expect = 5e-13
Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 4/183 (2%)
Frame = -1
Query: 756 ATMTKKVQKLQRASLQDPVKVEV-STKYQTVDKLMQSYIFIPVKFKDVYLVHILNEMA-- 586
AT K+VQ+L R L D ++V V S + Q + K L + E+
Sbjct: 308 ATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKD 367
Query: 585 -GNSFIVFVSTXXXXXXXXXXXXXXXXXAVPLHGQMSQNKRLAALNKFKSKSRSVLICTD 409
N ++F T A+ +HG +Q++R LN+F++ +++ TD
Sbjct: 368 RDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATD 427
Query: 408 VASRGLDIPHVDVVINLDIPLHSKDYIHRVXXXXXXXXXGKAITFVTQYDVELYQRIEQL 229
VASRG+D+ + V N D P +++DY+HR+ G A T+ T + + + + +
Sbjct: 428 VASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSI 487
Query: 228 IGK 220
+ +
Sbjct: 488 LSE 490
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 65.3 bits (152), Expect = 9e-12
Identities = 45/181 (24%), Positives = 82/181 (45%)
Frame = -1
Query: 756 ATMTKKVQKLQRASLQDPVKVEVSTKYQTVDKLMQSYIFIPVKFKDVYLVHILNEMAGNS 577
AT V+ L P ++ + + T+ + Q Y F+ K L + +++ N
Sbjct: 225 ATFPLIVKNFMDKHLNKPYEINLMDEL-TLRGVTQYYAFVDESQKVHCLNTLFSKLQINQ 283
Query: 576 FIVFVSTXXXXXXXXXXXXXXXXXAVPLHGQMSQNKRLAALNKFKSKSRSVLICTDVASR 397
I+F ++ H +M Q+ R + F++ L+C+D+ +R
Sbjct: 284 SIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTR 343
Query: 396 GLDIPHVDVVINLDIPLHSKDYIHRVXXXXXXXXXGKAITFVTQYDVELYQRIEQLIGKQ 217
G+DI V+VVIN D P +++ Y+HR+ G AI+F++ D RIE +G +
Sbjct: 344 GIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWADRFNLYRIENELGTE 403
Query: 216 L 214
+
Sbjct: 404 I 404
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 58.8 bits (136), Expect = 8e-10
Identities = 31/88 (35%), Positives = 45/88 (51%)
Frame = -1
Query: 582 NSFIVFVSTXXXXXXXXXXXXXXXXXAVPLHGQMSQNKRLAALNKFKSKSRSVLICTDVA 403
+S +VFV T ++G + Q RL +N F+ ++L+ TDVA
Sbjct: 347 DSTLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVA 406
Query: 402 SRGLDIPHVDVVINLDIPLHSKDYIHRV 319
SRG+DIP + VIN D P K ++HRV
Sbjct: 407 SRGIDIPLLANVINYDFPPQPKVFVHRV 434
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 55.6 bits (128), Expect = 7e-09
Identities = 29/119 (24%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Frame = -1
Query: 483 MSQNKRLAALNKFKSKSRSVLICTDVASRGLDIPHVDVVINLDIPLHSKDYIHRVXXXXX 304
+S+++R +++F + ++L+C+D+ +RG+D+ + VIN D PL + Y+HR+
Sbjct: 471 LSRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTAR 530
Query: 303 XXXXGKAITFVTQYDVELYQRIEQLIGKQLPLYKTE------ESEVMVLQERVAEAQRL 145
G A T V ++ + ++ + + + LP+ + + E +V ++ EA R+
Sbjct: 531 AGREGFAWTLVQSHEGHHFSKLVKQLRRTLPIKRIKIEFSHISEEFVVAYDKALEALRV 589
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 52.8 bits (121), Expect = 5e-08
Identities = 26/119 (21%), Positives = 56/119 (47%)
Frame = -1
Query: 495 LHGQMSQNKRLAALNKFKSKSRSVLICTDVASRGLDIPHVDVVINLDIPLHSKDYIHRVX 316
LH ++ +R + F+ +L TDV +RG+D P++ V+ + P ++ DYIHR+
Sbjct: 323 LHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIG 382
Query: 315 XXXXXXXXGKAITFVTQYDVELYQRIEQLIGKQLPLYKTEESEVMVLQERVAEAQRLTR 139
G+A + + + I+ L K+ + + + L+ + ++ + +R
Sbjct: 383 RTGRAGKTGEAYLILLEQEKPFLNSIKHLPLKRATIEPLSDQALSTLRSDIEKSSKFSR 441
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 48.8 bits (111), Expect = 8e-07
Identities = 38/169 (22%), Positives = 74/169 (43%), Gaps = 7/169 (4%)
Frame = -1
Query: 756 ATMTKKVQKLQRASLQDPVKVEVSTKYQTVDKLMQSYIFIPVK-FKDVYLVHILNEMAGN 580
AT +++V+K + ++ + T+ +V+ + Q Y+ + K LV + +
Sbjct: 294 ATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIG 353
Query: 579 SFIVFVSTXXXXXXXXXXXXXXXXXAVPLHGQMSQNKRLAALNKFKSKSRSVLICTDVAS 400
I+F L G + +R A ++ F+ + VL+ T+V +
Sbjct: 354 QSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIA 413
Query: 399 RGLDIPHVDVVINLDIPLHS------KDYIHRVXXXXXXXXXGKAITFV 271
RG+D+ V++V+N D+PL + Y+HR+ G +I FV
Sbjct: 414 RGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFV 462
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 41.1 bits (92), Expect = 2e-04
Identities = 24/64 (37%), Positives = 34/64 (53%)
Frame = -1
Query: 462 AALNKFKSKSRSVLICTDVASRGLDIPHVDVVINLDIPLHSKDYIHRVXXXXXXXXXGKA 283
AA +K K K R +RGLD +V V+N D+P ++K YIHR+ G A
Sbjct: 367 AAKDKSKKKKRVKQDKEYGVARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTA 426
Query: 282 ITFV 271
++FV
Sbjct: 427 MSFV 430
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 36.7 bits (81), Expect = 0.004
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = -1
Query: 483 MSQNKRLAALNKFKSKSRSVLICTDVASRGLDIPHVDVVINLDI 352
M+ ++ L+KFK+ +VLI T VA G+D+P ++VI +I
Sbjct: 407 MTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNI 450
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 31.5 bits (68), Expect = 0.13
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -1
Query: 483 MSQNKRLAALNKFKSKSRSVLICTDVASRGLDIPHVDVVINLD 355
MSQ + + +F+ + LI T + GLDI VD++I D
Sbjct: 476 MSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYD 518
>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 29.1 bits (62), Expect = 0.72
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -1
Query: 216 LPLYKTEESEVMVL-QERVAEAQRLTRIEMKELEDK--KSTKGKKRGADSDDDTE 61
+ L T+ SE + Q+R++E + RI+ K EDK S + DSDD +E
Sbjct: 203 MKLLDTKGSEELKKEQKRISELEEKERIQKKAFEDKGLVSDQDVNHSIDSDDQSE 257
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 28.7 bits (61), Expect = 0.95
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = -1
Query: 489 GQMSQNKRLAALNKFKSKSRS--VLICTDVASRGLDIPHVDVVINLDIPLHSKDYIHRVX 316
G +S +R + F++ + ++I T G++ V +V++ +P S DY+
Sbjct: 1451 GDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETG 1510
Query: 315 XXXXXXXXGKAITFVTQYD 259
A F +YD
Sbjct: 1511 RAGRDGKYAIAALFYEKYD 1529
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 28.7 bits (61), Expect = 0.95
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = -1
Query: 489 GQMSQNKRLAALNKFKSKSRS--VLICTDVASRGLDIPHVDVVINLDIPLHSKDYIHRVX 316
G +S +R + F++ + ++I T G++ V +V++ +P S DY+
Sbjct: 1451 GDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETG 1510
Query: 315 XXXXXXXXGKAITFVTQYD 259
A F +YD
Sbjct: 1511 RAGRDGKYAIAALFYEKYD 1529
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 135 EMKELEDKKSTKGKKRGADSDD 70
E KE +DKK K K++ +S+D
Sbjct: 472 EKKEKKDKKHKKSKRKSEESED 493
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 25.8 bits (54), Expect = 6.7
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = -1
Query: 267 QYDVELY-QRIEQLIGKQLPLYKTEESEVMVLQERVAEAQRLTRIEMKELEDKKSTKGKK 91
+ + EL+ +RI + P+ K E SE + ++ V + Q + + E++ ++ +K
Sbjct: 65 ELEKELFSERIPESQSAAEPVLKVENSENDLDEKLVLDGQHVEGDHSSDTEEEVVSEDQK 124
Query: 90 RGADSDDDTEDAVGVRRRXQGET 22
+ +DD++ + QGET
Sbjct: 125 QLNKTDDESTFIESHQIYIQGET 147
>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 804
Score = 25.4 bits (53), Expect = 8.9
Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 3/130 (2%)
Frame = -1
Query: 738 VQKLQRASLQDPVKVEVSTKY--QTVDKLMQSYIFIPVKFKDVYLVHILNEMAGNSFIVF 565
+ K+Q A + + E +Y + K M YI P KF+ + +E G+ IVF
Sbjct: 511 IAKVQCAEVWCAMTTEFYNEYLRENSRKRMLLYIMNPKKFQACQFLIDYHEKRGDKIIVF 570
Query: 564 VSTXXXXXXXXXXXXXXXXXAVPLHGQMSQNKRLAALNKFK-SKSRSVLICTDVASRGLD 388
++G Q +R+ L F+ ++ + + + V +D
Sbjct: 571 SDNVYALRAYAIKLGKYF-----IYGGTPQQERMRILENFQYNELVNTIFLSKVGDTSID 625
Query: 387 IPHVDVVINL 358
+P +I +
Sbjct: 626 LPEATCLIQI 635
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,527
Number of Sequences: 5004
Number of extensions: 42498
Number of successful extensions: 179
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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