Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_P20
(544 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0148 - 18426903-18427106,18430516-18430594,18430752-184309... 31 0.45
02_05_0958 + 33073302-33073442,33073839-33073913,33074382-330744... 30 1.4
01_01_0231 + 1951047-1951499 29 1.8
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 29 1.8
01_01_0229 - 1943473-1943922 29 1.8
01_01_0420 + 3175544-3176696,3177035-3178581,3179623-3179688,317... 28 4.2
04_04_0491 - 25605560-25605684,25605826-25605928,25606026-256075... 28 5.5
04_03_1031 + 21850857-21851009,21852229-21852350,21852447-218528... 27 7.3
03_02_0485 - 8808139-8808618 27 7.3
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 27 9.7
03_02_0484 + 8805053-8805538 27 9.7
03_02_0483 - 8804021-8804485 27 9.7
>05_04_0148 -
18426903-18427106,18430516-18430594,18430752-18430935,
18431020-18431063,18432028-18432165,18432713-18434511
Length = 815
Score = 31.5 bits (68), Expect = 0.45
Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +3
Query: 330 IYLINSLVLG-SAFS*DSFVSNSLICATLGSFFL 428
+ + +SLVL SA S D + NSLIC +LG FFL
Sbjct: 524 VLMASSLVLFLSAVSPDFVLGNSLICMSLGVFFL 557
>02_05_0958 +
33073302-33073442,33073839-33073913,33074382-33074497,
33076863-33076977,33077100-33077228,33078907-33078954,
33079343-33079469,33079634-33079789,33080031-33080287,
33080431-33080580,33080660-33080714,33080793-33081088,
33081252-33081335,33081869-33081941,33082164-33082291,
33082905-33083090,33083179-33083316,33083394-33083519,
33083705-33083965
Length = 886
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -1
Query: 442 VNITKRKNEPSVAQIRELLTKLSQENADPRTKELIKYILADDSQHTGLVINERILNIPA 266
+NI + + SV+ I + L LS+ K+L++ ADD+ G NE PA
Sbjct: 689 ININDQSKQASVSLILDSLKDLSEAELSTIRKQLLEEFSADDACPLGSHSNESTSQSPA 747
>01_01_0231 + 1951047-1951499
Length = 150
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 429 KEKMNPVWHRSENCLQNYLRRMQIPE 352
KE N WHR E ++RR ++PE
Sbjct: 88 KEDKNDKWHRVERSSGQFMRRFRLPE 113
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 429 KEKMNPVWHRSENCLQNYLRRMQIPE 352
KE N WHR E ++RR ++PE
Sbjct: 88 KEDKNDKWHRVERSSGQFMRRFRLPE 113
>01_01_0229 - 1943473-1943922
Length = 149
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 429 KEKMNPVWHRSENCLQNYLRRMQIPE 352
KE N WHR E ++RR ++PE
Sbjct: 87 KEDKNDKWHRVERSSGQFMRRFRLPE 112
>01_01_0420 + 3175544-3176696,3177035-3178581,3179623-3179688,
3179892-3179999
Length = 957
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -2
Query: 237 YRLNLRKLIGKICYTTLNTLFGSVKLTLLESHQKCFLQIK 118
+ +NLR+ +G + T F + +++ E CF +IK
Sbjct: 901 FDINLRRQLGALSSKTFEVFFKLINISISEDETVCFNRIK 940
>04_04_0491 -
25605560-25605684,25605826-25605928,25606026-25607592,
25608694-25610198
Length = 1099
Score = 27.9 bits (59), Expect = 5.5
Identities = 21/91 (23%), Positives = 39/91 (42%)
Frame = -1
Query: 430 KRKNEPSVAQIRELLTKLSQENADPRTKELIKYILADDSQHTGLVINERILNIPAAISVP 251
+R+ EPS LTK S + K++IK +L+D+ G+ ++ I A V
Sbjct: 162 ERRREPSPLTPTSCLTKCSLHGRERDKKQVIKLLLSDEYNCQGVY---SVVPIVGAAGVG 218
Query: 250 LFASLQTELEKAHRKNMLYNFKYLIWISKTY 158
SL + ++ K +W+ + +
Sbjct: 219 K-TSLVQHIYNDEALRSKFDMKMWVWVCQEF 248
>04_03_1031 + 21850857-21851009,21852229-21852350,21852447-21852891,
21852981-21853087,21853192-21854524,21854632-21854859,
21854951-21855181,21855278-21855537,21855651-21856113
Length = 1113
Score = 27.5 bits (58), Expect = 7.3
Identities = 17/71 (23%), Positives = 35/71 (49%)
Frame = -1
Query: 445 VVNITKRKNEPSVAQIRELLTKLSQENADPRTKELIKYILADDSQHTGLVINERILNIPA 266
++ I + + +++++ + L KL NAD TKE+++ + G + E+I +
Sbjct: 969 MLKIAPPELQNTISELYDALVKLLDNNADASTKEIVE-AMTRSLASVGSLPEEQIQDTTE 1027
Query: 265 AISVPLFASLQ 233
+ L SLQ
Sbjct: 1028 LATKMLLKSLQ 1038
>03_02_0485 - 8808139-8808618
Length = 159
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 429 KEKMNPVWHRSENCLQNYLRRMQIPE 352
+E+ + WHR E +LRR ++PE
Sbjct: 97 QEEKSDKWHRVERSSGKFLRRFRLPE 122
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 27.1 bits (57), Expect = 9.7
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = -1
Query: 310 HTGLVINERILNIPAAISVPLFASLQTELEKAH--RKNMLYNFKYLIWISKTYTTGESSE 137
HTG +N ++ + + ++ + EL +H +N L +KY + TG +S
Sbjct: 3264 HTGACLNS--IDTGSQVCSLVWNKNERELLSSHGFAQNQLTLWKYPSMVKMAELTGHTSR 3321
Query: 136 VLFANQEEKSLVSEAIAS 83
VLF Q L + A+
Sbjct: 3322 VLFTAQSPDGLTVASAAA 3339
>03_02_0484 + 8805053-8805538
Length = 161
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 429 KEKMNPVWHRSENCLQNYLRRMQIPE 352
+E+ WHR E +LRR ++PE
Sbjct: 99 QEEKTDKWHRVERSSGKFLRRFRLPE 124
>03_02_0483 - 8804021-8804485
Length = 154
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 429 KEKMNPVWHRSENCLQNYLRRMQIPE 352
+E+ WHR E +LRR ++PE
Sbjct: 92 QEEKTDKWHRVERSSGKFLRRFRLPE 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,147,180
Number of Sequences: 37544
Number of extensions: 177020
Number of successful extensions: 426
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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