Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_P18
         (414 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...    84   7e-18
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    26   2.7  
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    25   3.5  
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    25   6.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   6.1  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    24   8.1  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    24   8.1  

>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score = 84.2 bits (199), Expect = 7e-18
 Identities = 46/100 (46%), Positives = 59/100 (59%)
 Frame = -3

Query: 355 VKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQ 176
           +K  ELR +               L +LRV K+ GG  SKLSKI+  RK IAR+  V ++
Sbjct: 3   LKTFELRKQSQENLAEQLQELRQELASLRVQKIAGGSGSKLSKIKTTRKDIARILTVINE 62

Query: 175 KMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIK 56
             ++  R  YKNKKY PLDLR KKTRA+R+ALT +E   K
Sbjct: 63  SNRLAAREAYKNKKYIPLDLRQKKTRAIRRALTPYEQSRK 102


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -3

Query: 151 HYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKXEERDRERNLSSHLESM 5
           H +    +  + +A+  +A R  L  H    K E+R  ERN    L+++
Sbjct: 278 HGREINVRTKNAQARAQKANRAVLAYHSHIEKEEQRRAERNAKQRLQAL 326


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -3

Query: 178 QKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKXEERDRER 32
           +K   NL    KN+K K + L        +KAL K E + + E++ +ER
Sbjct: 5   EKQVENLSLEAKNEKPKEVILGEDGKPLSKKALKKLEKEREKEQKRKER 53


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -3

Query: 154 NHYKNKKYKPLDLRAKKTRAMRKAL---TKHEAK 62
           +H KN++Y  L+ + +K     KAL   TKH  K
Sbjct: 35  SHIKNRQYYILEKKIRKLMFAMKALLEETKHSTK 68


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = -3

Query: 187 VYHQKMKVN---LRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAK 62
           VYHQK K+N   L    + +K  PL+ R      + K +T    K
Sbjct: 79  VYHQKTKINDKLLSETEQLRKIYPLESRVFPKPTIVKEITNERTK 123


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 148 YKNKKYKPLDLRAKKTRAMRKALTKHEAKIKXEERDRE-RNLSSHLESM 5
           Y   + + LDL +K  +   KA +  EA  K E+ +RE +N +  L  M
Sbjct: 488 YTQLRQEHLDLLSKYKQIQLKASSAQEAIDKKEKMEREMKNKNLELADM 536



 Score = 24.2 bits (50), Expect = 8.1
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -3

Query: 169 KVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEA-KIKXEERDRERNL 26
           K  +    KNK  +  D+  ++ RA  +  T H + + K E  +RE  L
Sbjct: 519 KEKMEREMKNKNLELADMILERDRARHELETMHRSQRDKQESTERELRL 567


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 112 AKKTRAMRKALTKHEAKIKXEERDRERNLSSHLE 11
           A +   +RKA  + +A+   EER+R+R L    E
Sbjct: 22  AVQIEQLRKAQIREKAREITEERNRQRKLQRERE 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,357,098
Number of Sequences: 5004
Number of extensions: 20748
Number of successful extensions: 73
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)