Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_P18
         (414 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465...    94   5e-20
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086...    55   2e-08
12_02_0172 - 14891923-14892102,14892894-14892980                       29   1.5  
12_01_0152 - 1168928-1169377                                           28   3.4  
11_01_0155 - 1287003-1287452                                           28   3.4  
04_04_1462 - 33769122-33769151,33769385-33769426,33769571-337701...    27   5.9  
02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915           27   5.9  
12_02_0693 - 22207582-22207620,22208421-22208597,22209258-222093...    27   7.8  
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721...    27   7.8  
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901...    27   7.8  

>02_03_0340 +
           17946133-17946136,17946207-17946342,17946428-17946584,
           17947330-17947458
          Length = 141

 Score = 93.9 bits (223), Expect = 5e-20
 Identities = 51/99 (51%), Positives = 62/99 (62%)
 Frame = -3

Query: 364 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 185
           M ++K  ELR K+              L+ LRVAKVTGG  +KLSKI+VVR +IARV  V
Sbjct: 1   MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60

Query: 184 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHE 68
             QK +  LR  YK K   PLDLR KKTRA+R+ LTKH+
Sbjct: 61  ISQKQRAALREAYKKKSLLPLDLRPKKTRAIRRRLTKHQ 99


>06_03_1515 -
           30707600-30707613,30708093-30708167,30708596-30708647,
           30708751-30708831,30709145-30709219,30709870-30709977,
           30710026-30710032,30710133-30710268,30710361-30710685
          Length = 290

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 40/106 (37%), Positives = 53/106 (50%)
 Frame = -3

Query: 376 VTVKMGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIAR 197
           VTV M ++K   LR ++              L+ LRVA+VTGG  +KLS I+ VR A+  
Sbjct: 104 VTVAMARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIK-VRTALRE 162

Query: 196 VYIVYHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKI 59
            Y               K K   PLDLR KKT A+R+ LTKH+  +
Sbjct: 163 AY-------------KKKKKSLLPLDLRPKKTCAIRRRLTKHQGML 195


>12_02_0172 - 14891923-14892102,14892894-14892980
          Length = 88

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
 Frame = -3

Query: 268 VAKVTGGVASKLSKIRVVRKAIARVY--IVYHQKMKVNLRNHYKNKKYKPL---DLRAKK 104
           +A +  GV  K+S       A  R    +V H+ +++  RNH  ++KY+     +   + 
Sbjct: 1   MANLQVGVTRKISDPNTKAVATDRTIRNLVCHEDLRLTCRNHLSHQKYRSSLLGETPGRS 60

Query: 103 TRAMRKA-LTKHEAKIKXEER 44
            RA  K  +TK+ AK   E++
Sbjct: 61  RRAKTKGFVTKNRAKPGDEDQ 81


>12_01_0152 - 1168928-1169377
          Length = 149

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 262 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 173
           +V GG   K S+I  +R+AIA+  + Y+QK
Sbjct: 74  RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101


>11_01_0155 - 1287003-1287452
          Length = 149

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 262 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 173
           +V GG   K S+I  +R+AIA+  + Y+QK
Sbjct: 74  RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101


>04_04_1462 -
           33769122-33769151,33769385-33769426,33769571-33770158,
           33770398-33770508,33770585-33770625,33771238-33771382,
           33771578-33771781,33772626-33772769,33772991-33773183,
           33774559-33774602,33774694-33774822,33774907-33774954,
           33775058-33775120,33775198-33775236,33776694-33776767,
           33777460-33777518,33777709-33777768,33777920-33778044,
           33778693-33778751,33779418-33779511,33779572-33779625,
           33779775-33779813,33780423-33780602
          Length = 854

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 235 LSKIRVVRKAIARVYIVYHQKMKVNLRNHYKNKKYKPLDL 116
           +SK   ++K + R  +  HQ +K +L    K  +Y PLDL
Sbjct: 610 ISKENSIKKQVTRYKM--HQHLKFHLGEISKTSEYDPLDL 647


>02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915
          Length = 1270

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 142 NKKYKPLDLRAKKTRAMRKALTKHEAKIKXEERDRERNLSSHLESMP 2
           +KK +   L AK    + K    HE   +  E D  +NL S+++ MP
Sbjct: 422 SKKLRGSPLAAKTVDRLLKNNLSHECWTEVLEMDEWKNLQSNVDIMP 468


>12_02_0693 -
           22207582-22207620,22208421-22208597,22209258-22209347,
           22210215-22210280,22210473-22210570,22210669-22210789,
           22210875-22212477,22213332-22213915
          Length = 925

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -3

Query: 154 NHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKXEE--RDRERN 29
           N +  ++++     A    AM++A+ K EAK K  +  R+RER+
Sbjct: 454 NPFNEEEFEHSSSAAASAAAMKEAMDKAEAKFKHAKVVRERERD 497


>04_04_0623 +
           26669284-26669421,26670906-26671564,26671948-26672140,
           26672220-26672284,26672399-26672609,26673284-26673515,
           26674463-26674521,26674651-26674680,26674761-26674850
          Length = 558

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 170 HLLVIHNVNTCDSFSYNTDLG 232
           H   +HN N CDS  Y  D G
Sbjct: 396 HYWPVHNDNKCDSIKYAVDWG 416


>01_06_1729 + 39486553-39487413,39487953-39488020,39489574-39490154,
            39490623-39491432,39491738-39493035
          Length = 1205

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -3

Query: 163  NLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKXEERDRERNLSSHLESMP 2
            N  N  K+K  K  D+ + + ++  K  + H +  K   ++   N +SHL +MP
Sbjct: 1009 NRANKLKSKMEKE-DVPSSRPKSNIKEKSSHASGQKSNVQEANANSASHLRAMP 1061


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,383,806
Number of Sequences: 37544
Number of extensions: 122067
Number of successful extensions: 348
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)