Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_P18
(414 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14429-5|AAA28216.1| 123|Caenorhabditis elegans Ribosomal prote... 101 3e-22
U40413-5|AAK39175.1| 599|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical pr... 28 3.1
X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomera... 28 3.1
AF125459-6|AAN60503.1| 219|Caenorhabditis elegans Hypothetical ... 28 3.1
AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical ... 28 3.1
Z67884-4|CAH60753.1| 905|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z67884-3|CAA91809.2| 921|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z93389-9|CAB07670.2| 391|Caenorhabditis elegans Hypothetical pr... 26 9.4
>L14429-5|AAA28216.1| 123|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 35 protein.
Length = 123
Score = 101 bits (241), Expect = 3e-22
Identities = 55/113 (48%), Positives = 70/113 (61%), Gaps = 1/113 (0%)
Frame = -3
Query: 364 MGKVKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 185
M K+KC LR + L LRV+KVTGG ASKLSKIRVVRK IAR+ V
Sbjct: 1 MTKLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTV 60
Query: 184 YHQKMKVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIK-XEERDRERN 29
+Q K LR Y + KYKP+DLR KKTRA+R+ LT HE ++ +++ + RN
Sbjct: 61 INQTQKQELRKFYADHKYKPIDLRLKKTRAIRRRLTAHELSLRSAKQQAKSRN 113
>U40413-5|AAK39175.1| 599|Caenorhabditis elegans Hypothetical
protein C18B2.6 protein.
Length = 599
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -3
Query: 148 YKNKKYKPLDLRAKKTRAMRKALTKHEAKIKXEERDRERNLSSHLESMP 2
Y K+ L + ++ R R+A HEA+ + + R R RN +SH S P
Sbjct: 526 YVMHKFCGLKSQRRRCRETREA---HEARQRRDMRRRRRNSTSHSRSTP 571
>Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical
protein M01E5.5b protein.
Length = 734
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -3
Query: 145 KNKKYKPLDLRAKKTRAMRKALTKHE-AKIKXEERDRE 35
K ++ +D K+ R +RKA+TK E KIK EE++ E
Sbjct: 268 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIK-EEKEAE 304
>Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical
protein M01E5.5a protein.
Length = 806
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -3
Query: 145 KNKKYKPLDLRAKKTRAMRKALTKHE-AKIKXEERDRE 35
K ++ +D K+ R +RKA+TK E KIK EE++ E
Sbjct: 340 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIK-EEKEAE 376
>X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomerase
protein.
Length = 806
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -3
Query: 145 KNKKYKPLDLRAKKTRAMRKALTKHE-AKIKXEERDRE 35
K ++ +D K+ R +RKA+TK E KIK EE++ E
Sbjct: 340 KKCDFRAIDAYQKEQREIRKAMTKEEKLKIK-EEKEAE 376
>AF125459-6|AAN60503.1| 219|Caenorhabditis elegans Hypothetical
protein Y25C1A.8b protein.
Length = 219
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = -2
Query: 188 CVSPEDEGQS*KPLQKQEIQAFRFKSQEDPCYAQGSY*TRSKDQXRGKRSRKKS 27
C PE E + K +K + R + +E + + S R +D+ RGKRSR +S
Sbjct: 114 CSCPESEDEKEKDRRKMH-KTSRERDRES--HRKRSNSPRDRDRKRGKRSRSRS 164
>AF125459-5|AAD12844.1| 345|Caenorhabditis elegans Hypothetical
protein Y25C1A.8a protein.
Length = 345
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = -2
Query: 188 CVSPEDEGQS*KPLQKQEIQAFRFKSQEDPCYAQGSY*TRSKDQXRGKRSRKKS 27
C PE E + K +K + R + +E + + S R +D+ RGKRSR +S
Sbjct: 240 CSCPESEDEKEKDRRKMH-KTSRERDRES--HRKRSNSPRDRDRKRGKRSRSRS 290
>Z67884-4|CAH60753.1| 905|Caenorhabditis elegans Hypothetical
protein T14G8.3b protein.
Length = 905
Score = 27.1 bits (57), Expect = 5.4
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 169 KVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKXEERDRERNLS 23
K+N+ K K +DL ++ A +K L E K K E+ DRE ++
Sbjct: 608 KINVALTIKETKTDNIDLNEEEVTAAKKVLGDFEQKEK-EKHDREEAMN 655
>Z67884-3|CAA91809.2| 921|Caenorhabditis elegans Hypothetical
protein T14G8.3a protein.
Length = 921
Score = 27.1 bits (57), Expect = 5.4
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 169 KVNLRNHYKNKKYKPLDLRAKKTRAMRKALTKHEAKIKXEERDRERNLS 23
K+N+ K K +DL ++ A +K L E K K E+ DRE ++
Sbjct: 624 KINVALTIKETKTDNIDLNEEEVTAAKKVLGDFEQKEK-EKHDREEAMN 671
>Z93389-9|CAB07670.2| 391|Caenorhabditis elegans Hypothetical
protein T13F3.2 protein.
Length = 391
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 184 YHQKMKVNLRNHYKNKKY-KPLDLRAKKTRAMRKALTKH 71
Y ++ +L NHYKN + + R K A+ K+L KH
Sbjct: 332 YTNQLASDLHNHYKNDLHLEQYAQRVLKMMAIVKSLQKH 370
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,455,951
Number of Sequences: 27780
Number of extensions: 114089
Number of successful extensions: 393
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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