Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_P16
         (401 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110479-3|CAB60312.2|  330|Caenorhabditis elegans Hypothetical ...    29   1.7  
AC006680-2|AAK72302.1|  309|Caenorhabditis elegans Serpentine re...    27   6.7  
AC006679-8|AAK84470.1|  630|Caenorhabditis elegans Hypothetical ...    27   6.7  

>AL110479-3|CAB60312.2|  330|Caenorhabditis elegans Hypothetical
           protein Y105C5B.4 protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 4/26 (15%)
 Frame = +3

Query: 333 TITIYF----LKFFNMNMYLLYIFYN 398
           TI I+F    LKFF +NM   Y+FYN
Sbjct: 253 TILIFFSLKLLKFFELNMEEFYLFYN 278


>AC006680-2|AAK72302.1|  309|Caenorhabditis elegans Serpentine
           receptor, class x protein9 protein.
          Length = 309

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 270 YTLFGSXPLLIGIIYIXNDLXTITIYFLKFFNMNMYLLYIFY 395
           +++F S  + I +  +       +IY + FFN+   LL +FY
Sbjct: 17  FSIFSSVSIFISVFKLAFISRKSSIYVIAFFNIISDLLQLFY 58


>AC006679-8|AAK84470.1|  630|Caenorhabditis elegans Hypothetical
           protein R13A5.9 protein.
          Length = 630

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 282 GSXPLLIGIIYIXNDLXTITIYFLKFFNMNMY 377
           G  P+L GI+ + N    I  YF  F  +N Y
Sbjct: 414 GGSPVLFGILSVVNHASEIITYFYVFKLINKY 445


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,284,342
Number of Sequences: 27780
Number of extensions: 29952
Number of successful extensions: 46
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)