Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_P15
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68753-7|CAA92987.1|  240|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ...    28   5.7  
AF003134-6|AAB54146.3|  827|Caenorhabditis elegans Hypothetical ...    28   7.6  

>Z68753-7|CAA92987.1|  240|Caenorhabditis elegans Hypothetical
           protein ZC518.4 protein.
          Length = 240

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 412 INLWVSSEPLSSFDFNILTLFRLEHGHYKHSNQRSLFH 299
           + +W    P  + D N+LTL    H HY+ +   +L H
Sbjct: 187 LKMWKDVTPSENGDKNLLTLKTYTHHHYRQAVMSTLIH 224


>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical
           protein F26A3.3 protein.
          Length = 1632

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 347 IRTWSLQTQQSKISLPP-WRF*CLLRPCN*KFID-RGKRSNDELLLFSS 207
           +R WS+    SK S    W   C+ RP   KFI  R  R   E++ +SS
Sbjct: 721 LRQWSISYNISKPSDDSSWSLNCMFRPSQIKFISKRHPRDQVEIVKYSS 769


>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
           polymerase relatedEGO-1 protein.
          Length = 1632

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 347 IRTWSLQTQQSKISLPP-WRF*CLLRPCN*KFID-RGKRSNDELLLFSS 207
           +R WS+    SK S    W   C+ RP   KFI  R  R   E++ +SS
Sbjct: 721 LRQWSISYNISKPSDDSSWSLNCMFRPSQIKFISKRHPRDQVEIVKYSS 769


>AF003134-6|AAB54146.3|  827|Caenorhabditis elegans Hypothetical
           protein ZC581.9 protein.
          Length = 827

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 352 FRLEHGHYKHSNQRSLFHHGDSDV 281
           +RL HGH++  N +S+F + D+ V
Sbjct: 71  YRLTHGHWRIFNSKSVFGNKDASV 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,685,317
Number of Sequences: 27780
Number of extensions: 256710
Number of successful extensions: 434
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)