Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_P14
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    28   1.4  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   9.7  

>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = -3

Query: 638 ALLKPTPEYEMLLLLFSEAVKKIFSTTTKL-----YALPVELCQRWNLKVWRNFRQSVDD 474
           AL+K  P Y   L+ FS+ ++ +FS + K        LP +L    NL+    F ++V  
Sbjct: 458 ALVKVIPHYHNKLIDFSQVLQLVFSASEKFPIQENQPLPEQLMFLSNLEKQTPFAKAVGS 517

Query: 473 SI 468
           SI
Sbjct: 518 SI 519


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 203 CTPPYYRFKIQSLQYCVGRTNNI 271
           C P +YR     L+YC  ++N I
Sbjct: 332 CAPYFYRLMDLCLRYCYSQSNEI 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,132,424
Number of Sequences: 5004
Number of extensions: 63307
Number of successful extensions: 141
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)