Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_P14
         (817 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0086 + 25703513-25703573,25703665-25703760,25703966-257040...    30   2.5  
05_04_0313 + 20129358-20129777                                         29   3.3  
01_06_1788 - 39873900-39873986,39874009-39874137,39874180-398742...    29   4.4  

>02_05_0086 +
           25703513-25703573,25703665-25703760,25703966-25704092,
           25704236-25704350,25705249-25705305
          Length = 151

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 197 IKCTPPYYRFKIQSLQYCVGRTNNIRCVRSIVKKCVILAHVCTNYC 334
           +KC     R  I S+ +C+    N   VR I K+C+ + + C   C
Sbjct: 7   LKCRSQEQRSSIASVLWCIADEWNDLTVRIIPKECIAMCNFCYVDC 52


>05_04_0313 + 20129358-20129777
          Length = 139

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +1

Query: 268 YSLCKIYSKKMRDLGSRMHKLLQ*YWYA-PRQFVILSKPYMSIMMSSFAXVSFSEKHST* 444
           Y  C+I S+ + ++  R    +  YW+   R   I+S+  M + +   A   F  + ++ 
Sbjct: 68  YRTCRIISRTLMEVAVRE---IATYWFENQRASRIISRTLMKVAVREIATYWFENQRASR 124

Query: 445 AIIELPIEMESSTDC 489
            I   P+E+  + DC
Sbjct: 125 IISRTPMEVCGAGDC 139


>01_06_1788 -
           39873900-39873986,39874009-39874137,39874180-39874246,
           39874874-39874909,39875146-39875292,39875772-39875899,
           39876349-39876435,39876523-39876633,39877433-39877600,
           39877665-39877749,39877826-39877942,39878051-39878127,
           39879981-39880077,39880175-39880377,39880519-39880645,
           39880687-39880754,39880855-39880908,39880990-39881108,
           39881651-39881729,39881803-39881865,39882113-39882232,
           39882718-39882774,39882872-39882988,39883122-39883172,
           39883262-39883360,39883438-39883583,39883740-39883887
          Length = 928

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 593 TVTITSRILAWALIVHYSPEELLK*RQWKIY 685
           +V    R+L W++IV   PE+  + R W IY
Sbjct: 829 SVNKNGRLLVWSVIVISGPEDWWQFRSWMIY 859


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,279,781
Number of Sequences: 37544
Number of extensions: 335958
Number of successful extensions: 685
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)