Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_P14
         (817 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.5  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    22   7.8  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    22   7.8  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -1

Query: 580 SRKYSQQLQNYMLYP*NYANDGI---*KCGEISDNPLMIPSLSVTQLLLMLNVF 428
           S+KY +Q  N + +  NY N G+       E+  NP+   +LSV + L+   V+
Sbjct: 45  SKKYFEQTLNELNFNLNYVNKGVTYKHTIIEMDSNPIK-TALSVCKSLIERQVY 97


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 254 GRTNNIRCVRSIVKKCVILAHVCTNYCN 337
           G  ++I+ V+ I  +C+  A   T+ CN
Sbjct: 100 GNADDIQLVKGIANECIENAKGETDECN 127


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 254 GRTNNIRCVRSIVKKCVILAHVCTNYCN 337
           G  ++I+ V+ I  +C+  A   T+ CN
Sbjct: 100 GNADDIQLVKGIANECIENAKGETDECN 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,047
Number of Sequences: 438
Number of extensions: 4600
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)