Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_P11
         (685 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q23Q48 Cluster: Zinc finger in N-recognin family protei...    35   2.1  
UniRef50_Q4A235 Cluster: Putative DNA topoisomerase; n=1; Emilia...    33   6.5  
UniRef50_Q8IIN2 Cluster: Putative uncharacterized protein; n=1; ...    33   8.6  

>UniRef50_Q23Q48 Cluster: Zinc finger in N-recognin family protein;
            n=1; Tetrahymena thermophila SB210|Rep: Zinc finger in
            N-recognin family protein - Tetrahymena thermophila SB210
          Length = 1795

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +1

Query: 391  IPLEEASDSSENSSLVTSFSVDKINTL---EKDIETSDSSEDEYIPLGNDFN*YCKII 555
            +P +   D+ +N +L+  F   KIN        I T DS + + IP+ ND+  Y K I
Sbjct: 1592 LPSQNEIDNLDNDTLIQQFKTKKINAFVFSTLTISTCDSYQFDIIPIPNDYLEYSKTI 1649


>UniRef50_Q4A235 Cluster: Putative DNA topoisomerase; n=1; Emiliania
           huxleyi virus 86|Rep: Putative DNA topoisomerase -
           Emiliania huxleyi virus 86
          Length = 1103

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
 Frame = +1

Query: 394 PLEEASDSSENSSLVTSFSVDKINTLEKD----IETSDSSEDEYIPLGNDFN 537
           PL  ASD+S+N+ +  +    K+ T ++D    IET+     EY+P GND++
Sbjct: 59  PLANASDASQNNPVAKNI---KVTTDQRDSSIKIETNTKFVIEYVPDGNDYS 107


>UniRef50_Q8IIN2 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 5922

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 24/88 (27%), Positives = 44/88 (50%)
 Frame = -1

Query: 379  SNNLNQEFFFYFTRVRETYRICNGSLNNNLKRNHGTVVLIIRTHVSRWLVAFKLLMSMGS 200
            ++N+N+  F  F +V E  +  N + NNN   N+ T+ +I ++  +++    + L +  +
Sbjct: 5606 NDNINKYSFMQFFQVNENIQNNNNNNNNN-NNNNNTIDVIPKSTKTKFTTLRRFLGTRMN 5664

Query: 199  GYNSKLDEPTISSTHHINK*KFTVRKAV 116
               SKL     S T  IN   F +R +V
Sbjct: 5665 NLYSKLKSELFSFT-LINSYDFLLRNSV 5691


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 516,450,267
Number of Sequences: 1657284
Number of extensions: 8850989
Number of successful extensions: 22278
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22261
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)