Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_P11
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    28   1.1  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   1.9  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      27   2.5  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.5  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    26   4.4  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    26   4.4  
SPAC17H9.16 |tom22||mitochondrial TOM complex subunit Tom22|Schi...    25   7.7  

>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +1

Query: 385 EDIPLEEASDSSENSSLVTSFSVDKINTLEKDIETSDSSEDEYIPLGND 531
           E +  E  SD  +NS +  S +  K  + +++I + +  E EY P+  D
Sbjct: 558 EQLQEEAVSDLEDNSDIDESANAGKDFSDDENIGSDEEDESEYDPMDTD 606


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +1

Query: 391 IPLEEASDSSENSSLVT--SFSVDKINTLEKDIETSDSSEDE 510
           + LE+++   + +SL +  S +++K+N LEK +  S+ S+DE
Sbjct: 700 LQLEKSNIQLQLTSLTSERSLALEKLNDLEKSLVLSERSKDE 741


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +1

Query: 352 RKTPGLDYWKPEDIPLEEASDSSENSSLVTSFSVDKIN-TLEKD-IETSDSSEDEYIPLG 525
           ++TP ++  +P+D+ L++ S   E     T    D     L +D I  S S  D+  P G
Sbjct: 109 KQTPSINVTEPQDLELDKVSQDHEKDQSNTYLMEDGYEFPLTRDLIRRSKSDADQTPPTG 168


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 24  HYKLIISSFIVFCSFLC 74
           HY  +  SF+ FC+F+C
Sbjct: 552 HYSFLFVSFMFFCAFVC 568


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 442  SFSVDKINTLEKDIETSDSSEDEYIPLGNDFN*YCKIIIXIGNS 573
            S S+   N++E D    D  ++EY  L  D    CK I   G++
Sbjct: 912  SLSLYMENSIENDSSVQDLLDEEYTQLVADRELLCKFIFPKGDA 955


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +1

Query: 406 ASDSSENSSLVTSFSVDKINTLEKDIETSDSSEDEYIPLGND 531
           +S + E+++LV   SVD   TLE+     +++EDE  PL +D
Sbjct: 455 SSPTEESNALVEDTSVDISATLEEANTQQENAEDE--PLVSD 494


>SPAC17H9.16 |tom22||mitochondrial TOM complex subunit
           Tom22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 391 IPLEEASDSSE-NSSLVTSFSVDKINTLEKDIETSDSSEDEY 513
           + LEE  D +E  +   T    D+    ++D+E SDS E ++
Sbjct: 2   VKLEEVVDETEVQNEQQTVIEKDQYIYAQEDVEESDSDESDF 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,267,170
Number of Sequences: 5004
Number of extensions: 40778
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)