Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_P09
(314 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 30 0.095
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 27 0.89
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 25 2.0
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo... 25 2.7
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 24 4.7
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 24 4.7
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 24 6.3
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 6.3
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 24 6.3
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 24 6.3
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual 24 6.3
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 24 6.3
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 23 8.3
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 23 8.3
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 29.9 bits (64), Expect = 0.095
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = +2
Query: 185 NSSSNNEKTRKNFVPHYSKFSYPKLHK----CFRSENNS 289
N N+ KTR++F PH S S+ LH+ F SEN S
Sbjct: 199 NLLGNDSKTRQSFPPHSSSSSHNSLHEPVIYDFSSENPS 237
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 26.6 bits (56), Expect = 0.89
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +2
Query: 23 LSGIASKPIHFIRITSKPHIPL---VQRTTPSIS 115
LSG+ PI I+ITS ++P+ ++ +P +S
Sbjct: 321 LSGVVKNPIQDIKITSDTNVPVNAGIRNNSPRLS 354
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.4 bits (53), Expect = 2.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 155 YMIKTPAR*TNSSSNNEKTRKNFVPHYSKFSYPKL 259
Y IK P TN S K + F+P Y+K P+L
Sbjct: 408 YPIKPP---TNISEIPRKLKSGFIPPYAKRVVPRL 439
>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 25.0 bits (52), Expect = 2.7
Identities = 8/37 (21%), Positives = 21/37 (56%)
Frame = -1
Query: 305 SAGRIDCYFPNENTCVTWDTRI*NNVVRNSSEFFHYY 195
S G + C+ PN+++ + R+ NN + + + +++
Sbjct: 120 SLGEMCCFLPNQSSITMYTGRLLNNNIGFAQSWLYFW 156
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 24.2 bits (50), Expect = 4.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 247 REFRIMWYEILPSFFIITAAVGLPGWGLY 161
+EF +W IL + FII++ + GLY
Sbjct: 342 KEFYELWNSILQNHFIISSRNIIDSLGLY 370
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 24.2 bits (50), Expect = 4.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +2
Query: 14 YFNLSGIASKPIHFIRITSKPHIPLVQRTTP 106
Y N+S +S + I I+SKP VQR TP
Sbjct: 569 YSNVSSASSNSLISI-ISSKPSSSTVQRQTP 598
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 23.8 bits (49), Expect = 6.3
Identities = 10/31 (32%), Positives = 13/31 (41%)
Frame = +2
Query: 176 R*TNSSSNNEKTRKNFVPHYSKFSYPKLHKC 268
R T NEK K +P +F H+C
Sbjct: 1702 RHTKCHRRNEKNEKEIIPDTCRFGDEFTHRC 1732
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 23.8 bits (49), Expect = 6.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 191 SSNNEKTRKNFVPHYSKFSY 250
SS+ E+TRK F H++ F +
Sbjct: 78 SSSYEQTRKPFFHHFNPFEF 97
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 23.8 bits (49), Expect = 6.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 206 KTRKNFVPHYSKFSYPKLHKCFRSEN 283
+T K +P + + YP LHK F SEN
Sbjct: 793 RTVKTLLPAFKEQVYPILHK-FVSEN 817
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 23.8 bits (49), Expect = 6.3
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 17 FNLSGIASKPIHFIRITSKPHIPLVQRTTPS 109
F+ G + F + T KP PL TTP+
Sbjct: 571 FDKDGRLKEISQFSKTTIKPETPLTPTTTPT 601
>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 533
Score = 23.8 bits (49), Expect = 6.3
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 14 YFNLSGIASKPIHFIRITSKPHIPLVQRT-TPSISKRASIM 133
Y+ +G P+H + ++ K HI + T T S +A+I+
Sbjct: 113 YYAKTGSLVGPLHGVPVSVKEHISIKNHTATASFLAKANII 153
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 23.8 bits (49), Expect = 6.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 230 HYSKFSYPKLHKCFRSENNS 289
H SK+S P+LH F N+
Sbjct: 142 HASKYSVPELHTTFLPNTNA 161
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 23.4 bits (48), Expect = 8.3
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +2
Query: 203 EKTRKNFVPHYSKFSYPKLHKCFRSENNSQFGRPN 307
EKT++NF S +YP ++ N+ G N
Sbjct: 323 EKTKRNFPKFQSSATYPPFSAHHQARRNNPQGFRN 357
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 23.4 bits (48), Expect = 8.3
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = -2
Query: 169 GLYHIHNLTLGNHYRRSLTDRWSRALYQRDMRLTGN 62
G+++ HN T+G + + ++R R+ D + G+
Sbjct: 333 GVHNFHNFTVGQAFHQKNSNRVIRSFTASDPFMIGD 368
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,286,986
Number of Sequences: 5004
Number of extensions: 22912
Number of successful extensions: 49
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -