Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_P09
(314 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-16... 31 0.25
04_04_0584 + 26381220-26381232,26381583-26381594,26381921-263820... 31 0.25
04_03_0363 - 14942195-14942203,14942421-14943417,14944178-14944278 31 0.25
01_07_0167 - 41613834-41613842,41614060-41615056,41615456-416163... 31 0.25
05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,518... 27 3.1
11_06_0047 + 19595904-19596185,19596284-19596424,19597195-195973... 27 4.1
01_07_0302 - 42611150-42611812,42611881-42611961,42612064-426121... 27 4.1
05_03_0146 + 8883761-8883860,8886000-8886086,8886574-8886684,888... 26 5.4
01_03_0230 - 14004159-14004344,14004422-14004514,14004613-140046... 26 7.1
04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680 25 9.4
>07_01_0024 +
159839-159923,160395-160442,160884-160895,161347-161427,
161530-161675,161918-161965,162054-162203,165647-165706,
165788-165859,165960-166409,166640-166839,167239-168236,
168676-168683,169057-169230,169341-169659,169748-169824,
169897-169966,170040-170111,170204-170418,170540-170665,
170751-171046,171133-171157,171163-171303,171400-171498,
171571-171702,171793-171912
Length = 1407
Score = 30.7 bits (66), Expect = 0.25
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 206 KTRKNFVPHYSKFSY-PKLHKCFRSE-NNSQFGR 301
+TRKNF+P YSK + P +H SE N++F R
Sbjct: 481 RTRKNFIPVYSKTDFCPFIHSTALSEGTNARFKR 514
>04_04_0584 +
26381220-26381232,26381583-26381594,26381921-26382028,
26382137-26382217,26382320-26382465,26382550-26382624,
26382709-26382756,26382845-26382994,26383081-26383140,
26383394-26384274,26384674-26385670,26385887-26385895
Length = 859
Score = 30.7 bits (66), Expect = 0.25
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 206 KTRKNFVPHYSKFSY-PKLHKCFRSE-NNSQFGR 301
+TRKNF+P YSK + P +H SE N++F R
Sbjct: 555 RTRKNFIPVYSKTDFCPFIHSTALSEGTNARFKR 588
>04_03_0363 - 14942195-14942203,14942421-14943417,14944178-14944278
Length = 368
Score = 30.7 bits (66), Expect = 0.25
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 206 KTRKNFVPHYSKFSY-PKLHKCFRSE-NNSQFGR 301
+TRKNF+P YSK + P +H SE N++F R
Sbjct: 64 RTRKNFIPVYSKTDFCPFIHSTALSEGTNARFKR 97
>01_07_0167 -
41613834-41613842,41614060-41615056,41615456-41616336,
41616437-41616508,41616590-41616649,41616736-41616885,
41616974-41617021,41617107-41617181,41617266-41617411,
41617514-41617594,41617703-41617810,41618046-41618057,
41618137-41618148,41618499-41618546,41619021-41619105
Length = 927
Score = 30.7 bits (66), Expect = 0.25
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 206 KTRKNFVPHYSKFSY-PKLHKCFRSE-NNSQFGR 301
+TRKNF+P YSK + P +H SE N++F R
Sbjct: 623 RTRKNFIPVYSKTDFCPFIHSTALSEGTNARFKR 656
>05_01_0578 +
5180538-5181385,5182480-5182595,5183397-5183605,
5184024-5184143,5184247-5184375,5184466-5184591,
5185550-5185667,5186471-5186680,5186788-5187100,
5187467-5187560,5187760-5187868,5188322-5188593,
5188684-5188811,5188977-5189211,5189794-5189982,
5190069-5190349,5190431-5190698,5190719-5190961,
5191598-5191680,5192484-5192493
Length = 1366
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -2
Query: 151 NLTLGNHYRRSLTDRWSRALYQRDMRLTGNPYEVNGLGSYP 29
N+ + NH + SL RWSR Q + L GL YP
Sbjct: 372 NVFIKNHAKVSLPLRWSRIQAQGQISLLSRATLTFGLTHYP 412
>11_06_0047 +
19595904-19596185,19596284-19596424,19597195-19597307,
19597970-19598049,19598557-19598720,19598931-19599060,
19599155-19599254,19599452-19599500,19599775-19599849,
19600026-19600124,19600745-19600823,19600897-19601045,
19601334-19601393,19601490-19601684
Length = 571
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 214 PSFFIITAAVGLPGWGLYHIHNLTLGNHYRRS 119
P+F ITAAVG+ WG + +L YR S
Sbjct: 305 PNFSRITAAVGIWSWGAISLAFASLVMFYRVS 336
>01_07_0302 -
42611150-42611812,42611881-42611961,42612064-42612150,
42612283-42612378,42612479-42612543,42612919-42612975,
42613066-42613147,42613235-42613327,42613714-42613785,
42613881-42613985
Length = 466
Score = 26.6 bits (56), Expect = 4.1
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = -2
Query: 157 IHNLTLGNHY--RRSLTDRWSRALYQRDMRLTGNPY-EVNGL 41
I NL LGN+ RRS + S Y R++ L GNP E +GL
Sbjct: 202 ILNLDLGNNLIERRSDLEVLSELHYLRNLNLQGNPIAEKDGL 243
>05_03_0146 +
8883761-8883860,8886000-8886086,8886574-8886684,
8887021-8887121,8887208-8887258,8887347-8887496,
8887577-8887639,8887728-8887814,8887908-8888018,
8888097-8888387,8889372-8889815
Length = 531
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +2
Query: 206 KTRKNFVPHYSKFSY-PKLHKCFRSE-NNSQFGR 301
+TR+N++P Y K + P +H SE N++F R
Sbjct: 388 RTRENYIPLYFKLDFCPFIHSTALSEVTNARFKR 421
>01_03_0230 -
14004159-14004344,14004422-14004514,14004613-14004673,
14004761-14004874,14004955-14005206,14005293-14007037
Length = 816
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -1
Query: 296 RIDCYFPNENTCVTWDTRI*NNVVRNSSEFFHYYCC 189
R++C ++TC+ NV R+ F HY CC
Sbjct: 758 RLECRTSFDDTCI-------KNVQRDLCHFIHYDCC 786
>04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680
Length = 936
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -2
Query: 175 GWGLYHIHNLTLGNHYRRSLTDRWSRALYQRDMRLTGNPYEVNGL 41
GW ++H TL N + S+ +R+ ++ +PYE+NGL
Sbjct: 342 GWRIFH---RTLSNGLQGSMILVTTRSSKVANLVSNSDPYELNGL 383
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,778,653
Number of Sequences: 37544
Number of extensions: 131772
Number of successful extensions: 335
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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