Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_P01
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024881-2|AAK71414.1|  274|Caenorhabditis elegans Serpentine re...    30   1.4  
AF016681-5|AAK68345.1|  144|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF038612-2|AAB92044.1|  507|Caenorhabditis elegans Hypothetical ...    28   5.7  
AC026301-3|AAK68898.2|  332|Caenorhabditis elegans Hypothetical ...    28   5.7  
AF036692-4|AAS47682.1|  318|Caenorhabditis elegans Serpentine re...    27   9.9  

>AC024881-2|AAK71414.1|  274|Caenorhabditis elegans Serpentine
           receptor, class sx protein7 protein.
          Length = 274

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -1

Query: 121 VFFLFGT-SNCLFLIVM*KRHE*LWNRTAYYKSLECLYAV 5
           +FF+FGT  NC F+ ++ K    L ++++Y +  +CL+ +
Sbjct: 20  LFFVFGTFGNCCFIALIFKNQR-LRSKSSYLQCFQCLFQI 58


>AF016681-5|AAK68345.1|  144|Caenorhabditis elegans Hypothetical
           protein F22E5.7 protein.
          Length = 144

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 158 SCVVNKNLKMIWMKIVLQFSNSSKLKVRINHKCNIFKHYYS 280
           S + +K L ++ +  +L FSNS+K    +N +C     +YS
Sbjct: 3   SSISSKLLLLLLLTFLLTFSNSTKFTALVNLRCRSHAVWYS 43


>AF038612-2|AAB92044.1|  507|Caenorhabditis elegans Hypothetical
           protein F13B6.2 protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 250 QMQYL*TLLFYKRLVFTFN*KHVFIFISNKNTSK 351
           QM Y    L    L+FT    H+FI  +NKN +K
Sbjct: 464 QMNYSAPFLLVLFLMFTIKKSHIFINYNNKNRTK 497


>AC026301-3|AAK68898.2|  332|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.7 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 657 TNFHVRSSLKRKSKFQHCYI-AKILYLEILKISKV 556
           T   +R +L RKS+FQ C I  K L L  ++I+KV
Sbjct: 252 TAVEIRDNLMRKSEFQRCRIYFKKLKLNPIEIAKV 286


>AF036692-4|AAS47682.1|  318|Caenorhabditis elegans Serpentine
           receptor, class x protein14 protein.
          Length = 318

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 8/52 (15%)
 Frame = -3

Query: 221 NLKTVAQFSSKSFSDSY*PH---NFSIEVEFC-----YSSLSFFSFRNK*LF 90
           NL+ +AQFS  S S +  PH    F I ++ C     +++LSFF+ ++  +F
Sbjct: 14  NLEKMAQFSVDSSSRTVGPHKINGFPILIKICFFGLLFTALSFFTIQHAPIF 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,430,446
Number of Sequences: 27780
Number of extensions: 248918
Number of successful extensions: 485
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)