Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_O24
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...   131   7e-32
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   3.9  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   6.8  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    25   9.0  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score =  131 bits (317), Expect = 7e-32
 Identities = 64/150 (42%), Positives = 91/150 (60%), Gaps = 5/150 (3%)
 Frame = -2

Query: 504 RFLLEGQIIELI*TIIPAFTLIFIALPSLRLLYXLDELNNPLITLKSIGHQ*Y*RYEYSD 325
           ++   G I+E I T+IPA  LI +ALPS +LLY LDE+  P +T+K+IG Q +  YE +D
Sbjct: 69  KYTTHGSIVEFIWTLIPALILILVALPSFKLLYLLDEVQKPSMTVKAIGRQWFWSYELND 128

Query: 324 F-----NNIEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXITATDVIHS*TIPS 160
           F       + FDSY++P  +++    R L+VD              +T+ DVIHS  +PS
Sbjct: 129 FVTNENEPVSFDSYMVPEEDLEEGSLRQLEVDNRLVLPIDTRIRLILTSGDVIHSWAVPS 188

Query: 159 LGVKADANPGRLNQTNFFINRPGIFFGQCS 70
           LG+K D  P RLNQ +  I+R G+F+GQCS
Sbjct: 189 LGIKCDCIPSRLNQVSLSIDREGLFYGQCS 218



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -3

Query: 122 IKQTSLLIDLE-FFLVNVQEICGANHSFIPIVIESISIE 9
           + Q SL ID E  F     E+CG  HS +PIV++ +S+E
Sbjct: 200 LNQVSLSIDREGLFYGQCSELCGVLHSSMPIVVQGVSLE 238


>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = -2

Query: 441 IFIALPS--LRLLYXLDELNNPLITLKSIGHQ*Y*RYEYSDFNNIEFDSYIIPSNEIKNN 268
           +F +LP   LRL++ L   +N  +T +S+ H+   R     F  I+F   ++P + I + 
Sbjct: 36  VFESLPLEVLRLIFLLSNNSNLAVTSRSLRHRLSLRNNTPIFMPIDFTLSMVPKSIILSI 95

Query: 267 EFRLL 253
           +  LL
Sbjct: 96  QRGLL 100


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 218 LFIGKIIRLSTSNSRNSLFFISLDGIIYESNSILLKSE 331
           LF+    R +T  SRN+L+FI LD     SN   + SE
Sbjct: 165 LFVRHWDRWNTG-SRNTLYFIELDKKTENSNYFEISSE 201


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 3   KFFD*NTFNYNRYKTMISSTNFLNIDQKKFQ 95
           K    N+   + ++ ++S  NF +ID+KKF+
Sbjct: 286 KLIQLNSAFLDEFEAIMSDLNFEDIDEKKFE 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,817,803
Number of Sequences: 5004
Number of extensions: 30340
Number of successful extensions: 54
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)