Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_O23
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016684-11|AAB66215.1|  555|Caenorhabditis elegans Hypothetical...    31   0.91 
AF016440-4|AAB65902.1|  157|Caenorhabditis elegans Adaptin, smal...    29   2.1  
AF016678-3|AAB66150.2|  297|Caenorhabditis elegans Hypothetical ...    27   8.5  

>AF016684-11|AAB66215.1|  555|Caenorhabditis elegans Hypothetical
           protein F45C12.5 protein.
          Length = 555

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 20/52 (38%), Positives = 24/52 (46%)
 Frame = -3

Query: 224 FINIV*TLSVFDWVRNFTTEITFYCQFNPLLHDKYYVLIIYDIYLQCSKRTL 69
           F  IV    V   +RN+   I F C    LLH ++Y    Y I   CSKR L
Sbjct: 388 FDEIVGNSGVTGVLRNYGWLIVFACVLGILLHLRFYKRKQYSIESFCSKRYL 439


>AF016440-4|AAB65902.1|  157|Caenorhabditis elegans Adaptin, small
           chain (clathrinassociated complex) protein 1 protein.
          Length = 157

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 285 YMNFPDLSRTQICTGFITKCMHRKPVYLKTYVEYK 389
           Y  +PD  + +IC   IT+ + RKP  +  ++EYK
Sbjct: 20  YTAYPDKQKKKICRELITQILARKP-KMCAFLEYK 53


>AF016678-3|AAB66150.2|  297|Caenorhabditis elegans Hypothetical
           protein K07E8.5 protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 489 PSYAYTYYKNAASVEPVCAVYHKLFVYFII 578
           P+ AY Y   A  V PV AV+    VYF +
Sbjct: 50  PTLAYLYVIGAPIVFPVAAVFQTSSVYFCV 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,354,533
Number of Sequences: 27780
Number of extensions: 274291
Number of successful extensions: 521
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)