Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_O21
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0782 - 25148733-25149166,25149252-25149415,25149636-251496...    29   3.2  
08_01_0634 - 5511393-5511858,5512581-5512879                           27   9.7  

>01_05_0782 -
           25148733-25149166,25149252-25149415,25149636-25149664,
           25150049-25150109,25150264-25150475,25150587-25150742,
           25150837-25150986,25151486-25151545,25151653-25151780,
           25152399-25152807,25153087-25153106,25153916-25154048
          Length = 651

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +3

Query: 546 AGRISSMISAALLFR-NWFIASPITLPWL 629
           +G +S ++S+ L F  NWF A P+ LP+L
Sbjct: 15  SGDLSLLVSSVLCFGVNWFRALPLALPFL 43


>08_01_0634 - 5511393-5511858,5512581-5512879
          Length = 254

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
 Frame = +3

Query: 507 MNDWKCLAIDAEAA-----GRISSMISAALLFRNWFIASPITLPWLTV 635
           M DW  L +DA +      G +  +I A L+  +W  A+ +   W TV
Sbjct: 1   MRDWSELLLDALSVVFTKLGAVEVLIGAGLVCHSWLDAAKVPELWRTV 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,451,054
Number of Sequences: 37544
Number of extensions: 230013
Number of successful extensions: 508
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)