Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_O21
(645 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY736135-1|AAU84701.1| 253|Apis mellifera take-out-like carrier... 36 3e-04
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 26 0.36
AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength rhodo... 26 0.36
AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength rhodo... 26 0.36
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 25 0.83
U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive o... 24 1.1
AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 24 1.1
DQ494419-1|ABF55370.1| 127|Apis mellifera telomerase reverse tr... 22 4.4
DQ494418-1|ABF55369.1| 110|Apis mellifera telomerase reverse tr... 22 4.4
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 22 4.4
DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein. 21 7.7
>AY736135-1|AAU84701.1| 253|Apis mellifera take-out-like carrier
protein JHBP-1 protein.
Length = 253
Score = 35.9 bits (79), Expect = 3e-04
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -3
Query: 613 IGEAMNQFLNNNAAEIIEEMRPAASASIAKHFQSFINGAFTKIPIDVWLKP 461
+GE MN+F+N N+ + +E++ A + + F N F ++P D P
Sbjct: 202 LGEQMNRFINENSELLFKELQAAYEETFSLVFTKIDNEIFNRVPFDKIFPP 252
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 25.8 bits (54), Expect = 0.36
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = -1
Query: 309 KPVNISAGIIQLLKIWLF 256
KP++I+ +I+++ IWLF
Sbjct: 161 KPLSINGALIRIIAIWLF 178
>AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength
rhodopsin protein.
Length = 152
Score = 25.8 bits (54), Expect = 0.36
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = -1
Query: 309 KPVNISAGIIQLLKIWLF 256
KP++I+ +I+++ IWLF
Sbjct: 127 KPLSINGALIRIIAIWLF 144
>AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength
rhodopsin protein.
Length = 154
Score = 25.8 bits (54), Expect = 0.36
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = -1
Query: 309 KPVNISAGIIQLLKIWLF 256
KP++I+ +I+++ IWLF
Sbjct: 37 KPLSINGALIRIIAIWLF 54
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 24.6 bits (51), Expect = 0.83
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 539 RGGRSHFLDDLSRIVVQELVHCFPN 613
R RSH D R + +EL HC PN
Sbjct: 1674 RSIRSHSTWDPRRHMYEELNHCAPN 1698
>U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive
opsin protein.
Length = 377
Score = 24.2 bits (50), Expect = 1.1
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 549 GRISSMISAALLFRNWFIASPIT-LPWLTV 635
GR++S +A ++ WF +P T LP L V
Sbjct: 164 GRLNSKQAAVIIAFTWFWVTPFTVLPLLKV 193
>AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin
protein.
Length = 377
Score = 24.2 bits (50), Expect = 1.1
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 549 GRISSMISAALLFRNWFIASPIT-LPWLTV 635
GR++S +A ++ WF +P T LP L V
Sbjct: 164 GRLNSKQAAVIIAFTWFWVTPFTVLPLLKV 193
>DQ494419-1|ABF55370.1| 127|Apis mellifera telomerase reverse
transcriptase protein.
Length = 127
Score = 22.2 bits (45), Expect = 4.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 298 IHRFLLSQKIFRRLHICKLNNHFQYI 375
I FL+SQ+ +L I K NN +I
Sbjct: 78 IRMFLISQQKTSKLKIYKWNNQILHI 103
>DQ494418-1|ABF55369.1| 110|Apis mellifera telomerase reverse
transcriptase protein.
Length = 110
Score = 22.2 bits (45), Expect = 4.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 298 IHRFLLSQKIFRRLHICKLNNHFQYI 375
I FL+SQ+ +L I K NN +I
Sbjct: 61 IRMFLISQQKTSKLKIYKWNNQILHI 86
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 22.2 bits (45), Expect = 4.4
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Frame = -2
Query: 506 KRRLHEDTHRRVAQTLDE----PQSLLKV-----TIEIAIDILDMKSILQIT 378
K R H T + QTLD+ P +L K+ T +A D +D+ + ++
Sbjct: 877 KERTHRPTFANLTQTLDKLIRSPDTLRKIAQNRGTNPLAPDAVDLTQLTSVS 928
>DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein.
Length = 495
Score = 21.4 bits (43), Expect = 7.7
Identities = 7/13 (53%), Positives = 12/13 (92%)
Frame = +3
Query: 291 QKYSQVFIISKDI 329
QK+ +VF+++KDI
Sbjct: 400 QKHIKVFVVNKDI 412
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,640
Number of Sequences: 438
Number of extensions: 3247
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -