Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_O20
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    27   1.3  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    25   4.0  
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    25   5.2  
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    24   9.1  
SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    24   9.1  

>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 119 KPLSSATYVTVYVIPSGATQEYDPLITID--SSSVPTLMTSPCSS 247
           +PL SA YV V  +     +E+D  + ++   S+V T   SPC++
Sbjct: 559 RPLRSAEYVRVCELKCLQEEEFDNKVLLEQVESNVQTDHNSPCNT 603


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 11  NITISXRQLRSFFIQQAXLLLDDGIAP 91
           N T + RQ   F +  A L LDD +AP
Sbjct: 357 NTTYNERQCGIFAVYAAILSLDDSLAP 383


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = -1

Query: 231 VINVGTDDESIVIKGSYSWVAPDGITYTVTYVADDKGFQPSIEQGP 94
           ++++G DDE+I +    + + PD       Y       + ++E GP
Sbjct: 206 LVSIGKDDEAIQVMCKNAELPPDSDIIQTEYKQIKSDCEAAVEGGP 251


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -1

Query: 117 QPSIEQGPGGAIPSSSN 67
           QP +E+G GG++PS SN
Sbjct: 38  QP-VEEGEGGSLPSVSN 53


>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 346

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
 Frame = +2

Query: 332 LSSFGPCGAEWANAKKLNKTN-----NFIMLYTLLNFN 430
           L S GP  AEW N +   KT      ++I L  +LNF+
Sbjct: 36  LDSLGPQFAEWQNHELHPKTRDVSTLDWIFLVDILNFS 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,795,971
Number of Sequences: 5004
Number of extensions: 36006
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)