Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_O20
         (444 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643...    30   0.96 
07_01_0684 - 5161218-5161427,5161509-5161616,5162217-5162390,516...    29   1.7  
11_03_0021 + 9010846-9011672,9011753-9013700                           29   2.2  
12_01_0603 + 4937472-4938351,4938597-4938689,4938820-4939589,493...    28   3.9  
04_04_1467 - 33808507-33808588,33808869-33808942,33809028-338091...    27   5.1  
10_06_0143 - 11183574-11183761,11183989-11184344,11184437-111845...    27   6.8  

>02_05_1170 + 34663853-34663928,34664038-34664078,34664317-34664386,
            34664499-34664647,34664784-34664879,34665406-34665476,
            34665637-34665698,34665778-34665841,34665950-34666034,
            34666129-34666255,34666381-34666454,34666539-34666599,
            34666683-34666771,34666897-34667206,34667763-34667815,
            34668299-34668370,34668648-34668914,34669015-34669047,
            34669163-34669245,34669522-34669594,34669834-34670170,
            34670302-34670633,34670816-34671135,34671261-34671612,
            34671691-34671906
          Length = 1170

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -1

Query: 192  KGSYSWVAPDGITYTVTYVADDKGFQPSIEQGPGGAIPSSSNSXACW 52
            KG+Y  + P  I Y  +   DD    P+ EQ  GG++P+SS + + W
Sbjct: 981  KGAYVEIKP--ILYVPSPTNDDG--VPTREQEAGGSLPASSEAFSAW 1023


>07_01_0684 -
           5161218-5161427,5161509-5161616,5162217-5162390,
           5162515-5162643,5162722-5163009,5163114-5163346,
           5164235-5165060
          Length = 655

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +2

Query: 77  DGIAPPGPCSIDGWKPLSSATYVTVYVIPSGATQEYDPLITIDSSSVPTLMTS 235
           DG+   G  +++    L+  ++VTV   P  A  EYDP I    S    LM S
Sbjct: 159 DGLPGDGVRTVELPCGLAVGSHVTVVARPRAARPEYDPKIAERKSGQEPLMVS 211


>11_03_0021 + 9010846-9011672,9011753-9013700
          Length = 924

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 113 GWKPLSSATYVTVYVIPSGATQEYDPLITIDS 208
           G + LSS  +++  +IPSGAT E D L+  D+
Sbjct: 875 GLQHLSSLQHISAIIIPSGATSE-DTLVAEDA 905


>12_01_0603 +
           4937472-4938351,4938597-4938689,4938820-4939589,
           4939706-4939809,4940026-4940548,4940697-4941074
          Length = 915

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 113 GWKPLSSATYVTVYVIPSGATQEYDPL-ITIDSSSVPTLMTSPCSSRFDP 259
           G +PLSS   +T+  +P  +T E  P  I +D+  V  L   PC     P
Sbjct: 262 GIRPLSSGWTLTLGEVPQDSTSELPPFNIPVDTKIVKDL-DGPCRKFIGP 310


>04_04_1467 -
           33808507-33808588,33808869-33808942,33809028-33809194,
           33809392-33809461,33809544-33809681
          Length = 176

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +2

Query: 74  DDGIAPPGPCSIDGWKPLSSATYVTVYVIPS 166
           D   AP  P  +DG   L  ATY T  V+PS
Sbjct: 23  DPSSAPEPPPPVDGPYQLFGATYTTDVVLPS 53


>10_06_0143 -
           11183574-11183761,11183989-11184344,11184437-11184592,
           11184825-11184994,11185906-11186064,11186856-11187164,
           11187281-11187576,11187825-11188174,11188279-11188434,
           11188634-11188803,11189289-11189447,11190702-11191010,
           11191172-11191458,11191911-11192263,11192366-11192521,
           11192680-11192849,11195800-11195958,11196937-11197254,
           11197658-11197786
          Length = 1449

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = -1

Query: 369 LAHSAPQGPKDDNVQLLKFDSDNDGLG----SYRFLYEQTDGSKRDEQGEVINVGTDDES 202
           +A +   GP ++  Q+++ DSD   +     + +FL  +  GS   + G   N G DD S
Sbjct: 592 IATATVPGP-NETFQIIRLDSDKSRMRIRAPNGKFLQVKAMGSVTADHGASTNWGNDDPS 650

Query: 201 IVI 193
           + +
Sbjct: 651 VFV 653


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,837,551
Number of Sequences: 37544
Number of extensions: 245714
Number of successful extensions: 757
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)