Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_O20
         (444 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75710-9|CAB00024.2|  752|Caenorhabditis elegans Hypothetical pr...    31   0.38 
Z46787-18|CAO78705.1|  805|Caenorhabditis elegans Hypothetical p...    29   2.0  
Z35596-4|CAO78715.1|  805|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AC024744-2|AAK72068.1|  327|Caenorhabditis elegans Hypothetical ...    27   4.6  
U28742-2|AAA68332.2|  925|Caenorhabditis elegans Adaptin, alpha ...    27   6.1  
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z78018-3|CAB01444.1|  820|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z75710-9|CAB00024.2|  752|Caenorhabditis elegans Hypothetical
           protein D1081.3 protein.
          Length = 752

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 345 PKDDNVQLLK-FDSDNDGLGSYRFLYEQTDGSKRDEQGEVINVGTDDE 205
           P+D N   LK   + N     Y+ +++Q D  ++D +G VIN   DD+
Sbjct: 673 PEDSNDYFLKSMMAKNTERTVYKAMFDQFDSPEQDARGSVINEKEDDD 720


>Z46787-18|CAO78705.1|  805|Caenorhabditis elegans Hypothetical
           protein C30D11.1d protein.
          Length = 805

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -1

Query: 354 PQGPKDDNVQLLKFDSDNDGLGSYRFLYEQTDGSKRDEQGEVINVGTDDE 205
           P+  +DD V     D ++D     RFL +Q+ GS R    +V+N   D+E
Sbjct: 14  PEDEEDDEVFFEPADKNDD---KQRFLPKQSRGSSRFVSEDVLNNSDDEE 60


>Z35596-4|CAO78715.1|  805|Caenorhabditis elegans Hypothetical
           protein C30D11.1d protein.
          Length = 805

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -1

Query: 354 PQGPKDDNVQLLKFDSDNDGLGSYRFLYEQTDGSKRDEQGEVINVGTDDE 205
           P+  +DD V     D ++D     RFL +Q+ GS R    +V+N   D+E
Sbjct: 14  PEDEEDDEVFFEPADKNDD---KQRFLPKQSRGSSRFVSEDVLNNSDDEE 60


>AC024744-2|AAK72068.1|  327|Caenorhabditis elegans Hypothetical
           protein Y108G3AL.2 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 270 RIGTCKNRVRHYHCRISR 323
           ++  CK+ +RH+HCR  R
Sbjct: 278 KVSKCKHHLRHHHCRKHR 295


>U28742-2|AAA68332.2|  925|Caenorhabditis elegans Adaptin, alpha
           chain (clathrinassociated complex) protein 2 protein.
          Length = 925

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = -1

Query: 339 DDNVQLLKFDSDNDGLGSYRFLYEQTDGSKRDEQGEVINVGTDDE 205
           + +  L+ FDS ND   S   ++    G+    QG+ + +   D+
Sbjct: 642 EGSTSLVDFDSTNDTTASLADVFANNSGTGLGAQGDEVEIANKDD 686


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
            F55H12.3 protein.
          Length = 2972

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +2

Query: 98   PCSIDGWKPLSSATYVTVYVIPSGATQEYDPLITIDSSSVPTLMTSPCSSRF 253
            P  I    P S+ +  +   +PSG++ EY P  T   SS  T   S  SS F
Sbjct: 1165 PVCISTTTPSSTPSSTSSPTLPSGSSTEYTPRAT--QSSTTTSYGSTLSSDF 1214


>Z78018-3|CAB01444.1|  820|Caenorhabditis elegans Hypothetical
           protein W07G4.3 protein.
          Length = 820

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 155 VIPSGATQEYDPLITIDSSSVPTLMTSPC 241
           V+   ATQ++ PL+ I +  VP+L+   C
Sbjct: 450 VLALSATQQFYPLVEISNRIVPSLIPLTC 478


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,068,756
Number of Sequences: 27780
Number of extensions: 212549
Number of successful extensions: 664
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)