Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_O18
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    26   6.9  
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    25   9.2  

>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +2

Query: 599 DRHS*INLSIRKKKGIKTAHQSLH*TSDALNRESPEP*KSQMCNK 733
           D H       RKK   K  HQS H  +     ES EP + +  NK
Sbjct: 47  DGHKKPRSESRKKYDAKKQHQSSHFATPVKGVESSEPTEKKKRNK 91


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -1

Query: 708 GSGDSRFSASLV*CND*CAVLIPFFFRID 622
           G GD+RF + LV CND   V I F   ID
Sbjct: 35  GCGDARFLSYLVPCND--QVPIEFLAGID 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,310
Number of Sequences: 5004
Number of extensions: 52588
Number of successful extensions: 81
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)