Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_O14
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    199   2e-51
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   192   3e-49
12_02_0089 + 13488932-13489915                                         29   3.3  
03_06_0712 - 35683814-35684065,35685296-35685466                       27   9.9  
03_02_1011 + 13198641-13198899,13199471-13199604,13199805-131999...    27   9.9  

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  199 bits (485), Expect = 2e-51
 Identities = 92/162 (56%), Positives = 127/162 (78%), Gaps = 1/162 (0%)
 Frame = -2

Query: 571 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-RLLKVEKWF 395
           MK I+A++ ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++   R L+V+ WF
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60

Query: 394 GSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 215
           G+++ +AA+RT  SHV+N+I GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK
Sbjct: 61  GTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEK 120

Query: 214 YIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQ 89
            +R+V M  GVT++ S K KDEL+++GN +E VS SAALI Q
Sbjct: 121 KVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQ 162


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  192 bits (467), Expect = 3e-49
 Identities = 89/155 (57%), Positives = 120/155 (77%), Gaps = 3/155 (1%)
 Frame = -2

Query: 544 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP---RLLKVEKWFGSKKELA 374
           ++IP G+TVHV +++VTV+GPRG L RNFKHL +D +++     R L+V+ WFG+++ +A
Sbjct: 1   MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMA 60

Query: 373 AVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKM 194
           A+RT  SHV+N+I GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M
Sbjct: 61  AIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDM 120

Query: 193 APGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQ 89
             GVT++ S K KDEL+++GN +E VS SAALI Q
Sbjct: 121 LEGVTILRSEKVKDELVLDGNDIELVSRSAALINQ 155


>12_02_0089 + 13488932-13489915
          Length = 327

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 66  PYSCXVVACWMRAAELETSSKELPSMINS 152
           PY+  VV  W RA EL   S+E  S++++
Sbjct: 165 PYTSPVVTLWYRAPELILGSQEYDSLVDT 193


>03_06_0712 - 35683814-35684065,35685296-35685466
          Length = 140

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = -2

Query: 475 VLKRNF-KHLAVDIRMVNPRLLKVE 404
           VLKR+F +  AVD+R +NP++ K E
Sbjct: 5   VLKRHFSRKRAVDVRRINPKVPKEE 29


>03_02_1011 +
           13198641-13198899,13199471-13199604,13199805-13199934,
           13200290-13200450,13200587-13200688,13200786-13200890,
           13200965-13201093,13201180-13201320,13201855-13201955,
           13202300-13202357,13202656-13202943
          Length = 535

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = +3

Query: 75  CXVVACWMRAAELETSSKELPSM-----INSSFCLGELTTV 182
           C +V  W     L T SK+ P++     INSSF  G L +V
Sbjct: 263 CDLVPAWATKGWLRTLSKDYPTLAFHASINSSFGKGSLLSV 303


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,336,736
Number of Sequences: 37544
Number of extensions: 356507
Number of successful extensions: 794
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)