Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_O13
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0333 + 2404459-2404857,2404917-2405009,2405428-2405522,240...    29   1.6  
01_06_1556 - 38222071-38222708,38222795-38222822,38222950-382230...    28   4.8  
08_01_0987 + 9979651-9979746,9979818-9980058,9980947-9981090,998...    27   8.5  

>06_01_0333 +
           2404459-2404857,2404917-2405009,2405428-2405522,
           2406146-2406219,2406307-2406395,2406745-2406858
          Length = 287

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 493 LGVPNSVLSAPNXVLTEKNSKEFIVNLSSFSYICPHL 383
           L V N +L+    +       EF V +S+F+YI PHL
Sbjct: 220 LSVQNRLLNIDENIYIPITKGEFAVIVSTFNYIIPHL 256


>01_06_1556 -
           38222071-38222708,38222795-38222822,38222950-38223070,
           38223206-38223318,38223424-38223506,38223868-38223930,
           38224100-38224254,38224411-38224580,38225101-38225189,
           38225304-38225496,38225655-38225779,38226069-38226475,
           38226855-38226919,38227414-38227692,38227772-38227845,
           38228241-38228292,38228366-38228473,38228871-38228972,
           38229100-38229173,38229262-38229435,38229667-38229771,
           38229867-38229977,38230364-38230487
          Length = 1150

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 280 RKLKWNFRYCFKQYCEFYQVFFKISSLMNNI 372
           +KL  N   C K+YC  +++    + L NNI
Sbjct: 672 KKLDCNLAACLKRYCSEFRLLLTGTPLQNNI 702


>08_01_0987 +
           9979651-9979746,9979818-9980058,9980947-9981090,
           9981253-9981313,9981603-9982061,9982472-9982529,
           9983579-9983839
          Length = 439

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 404 FIHLSPSTRTKMLFIKELILKKTW*N 327
           FIHL    R K++  +++++ KTW N
Sbjct: 158 FIHLFEKLREKIVAARDIVVLKTWEN 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,666,449
Number of Sequences: 37544
Number of extensions: 147621
Number of successful extensions: 260
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)