Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_O11
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|...    30   0.25 
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   3.1  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   5.3  

>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 340

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 21/74 (28%), Positives = 36/74 (48%)
 Frame = +1

Query: 88  YRFNQENR*LFVHSTKLTVSLRSSLCLHKLPTKRDRPYSITPKSKLHQAQDLNTGFENVT 267
           ++F +E + ++V    LTVS  S LCL +   + ++PY I   S    +Q      ++V 
Sbjct: 148 WKFVEEAKVIYVGGFHLTVSPESMLCLAQHANENNKPY-IMNLSAPFLSQFFKEQMDSVI 206

Query: 268 RIQSLQVFNEARVL 309
                 + NEA +L
Sbjct: 207 PYCDYVIGNEAEIL 220


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = +1

Query: 157 SLCLHKLPTKRDRPYSITPKSKLHQAQDLNTGFENVTRIQSLQVFNEARVLEQTLTLFVL 336
           SLC H L +K    YS+T +SK      ++   +   +  SL +F+ A  L  +L+  ++
Sbjct: 187 SLCFHVLSSKSSTFYSLT-ESKSGLVNSVDRCIQFYEKSISLPMFHIAENLAISLSCLII 245

Query: 337 ATK----LTISKLVMLPI 378
           + +    LT+  L   PI
Sbjct: 246 SFRYSWSLTLVVLASYPI 263


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -1

Query: 448 WLILLNYCQKLNKHHI*FRNLGV*WVT*RVLRL*VWWLAQIKLESVP 308
           W IL++ C  +N      RN+G       +  L ++W  Q K + +P
Sbjct: 144 WFILVSKCSPVNSMASRIRNIGSALFVLTIFPL-IYWYIQHKFKHIP 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,017
Number of Sequences: 5004
Number of extensions: 59898
Number of successful extensions: 148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)