Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_O11
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0072 + 27490881-27490949,27491756-27491837,27492758-274928...    32   0.45 
01_03_0282 - 14580875-14580891,14582126-14585855                       30   1.8  
08_01_0811 - 7872886-7873261,7873446-7873861,7874253-7874262,787...    29   3.2  
01_01_0216 + 1843413-1843509,1844583-1844694,1844841-1844908,184...    28   7.3  
12_02_0667 + 21682386-21682944,21683042-21683201,21683419-216834...    27   9.7  

>05_07_0072 +
           27490881-27490949,27491756-27491837,27492758-27492821,
           27492992-27493055,27493295-27493357,27493458-27493558,
           27493663-27493729,27493821-27493892,27493997-27494158,
           27494791-27494864,27494943-27495040,27495471-27495578,
           27495746-27495813,27495907-27496044,27496150-27496197,
           27496433-27496645
          Length = 496

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
 Frame = -3

Query: 473 PEITNGPILAYTVELLPKIEQTSY-----LIPQSWCVMGNITSFEIVSLVASTN-KVRVC 312
           P++T   +L   ++  P I  T Y     L+ + WC+M   +  +I++LV     ++   
Sbjct: 405 PKLTPSALLLSVLQQDPDIRITGYRVISGLVAREWCLMEICSKLDIINLVTDPKMEMTKL 464

Query: 311 SKTLASLNTCNDWILVTFSKPVL 243
              L  L  C+D   V  + P L
Sbjct: 465 GTYLGRLMNCDDADAVNLAPPFL 487


>01_03_0282 - 14580875-14580891,14582126-14585855
          Length = 1248

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -3

Query: 311  SKTLASLNTCNDWILVTFSKPVLRSWAWWSLLFGVMLYGLSLLVGSLWRQREDRS 147
            S T   L+ CN +   T SKP +  W W   L  + +    +L+   W QRE +S
Sbjct: 946  SVTEMKLDGCNMFFPTTPSKPTVGLWKWCKYLQKLEIKSCDVLIH--WPQREFQS 998


>08_01_0811 -
           7872886-7873261,7873446-7873861,7874253-7874262,
           7874370-7875334
          Length = 588

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 367 MLPITHQ-DCGIKYDVCSIFGNSSTV*ANIGPLVISGGFQLTTIRLSLIVATV 522
           M  +T Q DC I  DVC  F  SS+V   +G + +S G++  ++R S + A V
Sbjct: 532 MFALTDQHDCSILKDVCFEFITSSSV-HGLGDVALSEGYE--SLRESCLAAIV 581


>01_01_0216 +
           1843413-1843509,1844583-1844694,1844841-1844908,
           1845165-1845297,1845404-1845503,1845562-1845722,
           1846095-1846188,1846273-1846426,1846597-1846743,
           1846819-1846892,1846985-1847073,1847161-1847275,
           1847569-1847751
          Length = 508

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 25/95 (26%), Positives = 42/95 (44%)
 Frame = -3

Query: 467 ITNGPILAYTVELLPKIEQTSYLIPQSWCVMGNITSFEIVSLVASTNKVRVCSKTLASLN 288
           I++  +  Y  E+L   +Q SYL  +       I+  EI   + S N++ +C   LA+L 
Sbjct: 159 ISSALVPLYISEVLEHAQQLSYLRLRL-----QISPTEIRGALGSVNQLFICIGILAAL- 212

Query: 287 TCNDWILVTFSKPVLRSWAWWSLLFGVMLYGLSLL 183
                       P+  + AWW  +FG+ +    LL
Sbjct: 213 --------VAGLPLAGNPAWWRTMFGISIVPSILL 239


>12_02_0667 +
           21682386-21682944,21683042-21683201,21683419-21683467,
           21683570-21683683,21683794-21684294,21684594-21684980,
           21685074-21685172,21685380-21685478,21685817-21685890,
           21686387-21687023
          Length = 892

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 463 VISGGFQLTTIRLSLIVATVSLGTSTWLNAR 555
           V  GG + T   ++LI+  V   T TWL +R
Sbjct: 414 VAKGGAETTKFNMALILLPVCRNTITWLRSR 444


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,347,055
Number of Sequences: 37544
Number of extensions: 392295
Number of successful extensions: 877
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)