Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_O09
         (369 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.16 
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    24   0.50 
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    24   0.50 
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              20   8.1  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              20   8.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   8.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.16
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
 Frame = -3

Query: 313 SAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSA 134
           +A+ S PPP F  +  +  + S ++++ R  +   +  +A   M  +P    N  ++S  
Sbjct: 374 TALMSQPPPNFGVSQVSPVSMSALVSAVRSPAGGQLPPSAGAPMPPIP----NMSNMSGM 429

Query: 133 KPIRRQSTRL*SKPSEPD---PTRRCSADTS 50
            P+      + + P+ P    P RR  +D S
Sbjct: 430 PPLPNMPGSMPTMPTMPSMAGPIRRRISDKS 460


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 24.2 bits (50), Expect = 0.50
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 96  FDHSLVDCLLIGFALLRWNVFLFFCGKDVITLFA 197
           FD +L+DC+  G   L   V ++    +  TLFA
Sbjct: 29  FDSTLLDCIQSGIENLDSGVGIYAPDAEAYTLFA 62


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 0.50
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 96  FDHSLVDCLLIGFALLRWNVFLFFCGKDVITLFA 197
           FD +L+DC+  G   L   V ++    +  TLFA
Sbjct: 45  FDSTLLDCIQSGIENLDSGVGIYAPDAEAYTLFA 78


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 247 LKCFGSLKLPSEIL 288
           +KCFG  K   E+L
Sbjct: 120 VKCFGKYKTMKEVL 133


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 247 LKCFGSLKLPSEIL 288
           +KCFG  K   E+L
Sbjct: 120 VKCFGKYKTMKEVL 133


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 6/23 (26%), Positives = 10/23 (43%)
 Frame = +2

Query: 128 RFCAAQMERISLFLWQRCHHPLC 196
           R+C    ER+    W +    +C
Sbjct: 146 RYCLTPTERLEALCWTQDEDVIC 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,113
Number of Sequences: 438
Number of extensions: 1935
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)