Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_O06
         (761 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040655-8|AAB95047.1|  632|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z81521-4|CAB04229.1|  367|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U88173-11|AAK21390.1|  329|Caenorhabditis elegans Hypothetical p...    29   3.6  

>AF040655-8|AAB95047.1|  632|Caenorhabditis elegans Hypothetical
           protein T24E12.10 protein.
          Length = 632

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 534 QRTLLLPQEQHDIDERPHYMQPRSVRSVDSML 439
           Q T   P+ Q+DIDE  H++  +SV  V + L
Sbjct: 548 QETSQSPENQYDIDEEAHHLSTQSVAPVKAFL 579


>Z81521-4|CAB04229.1|  367|Caenorhabditis elegans Hypothetical
           protein F32A11.6 protein.
          Length = 367

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 431 GNA*SAVLANVPRVCSRLYNIGSRSHSGPPSPIYNLKHL 315
           G+A S V ++     S  ++ GS S SGPPSP   L  L
Sbjct: 22  GSADSGVFSSGVHASSPSHSQGSSSQSGPPSPTTQLNSL 60


>U88173-11|AAK21390.1|  329|Caenorhabditis elegans Hypothetical
           protein F46F11.8 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 428 NA*SAVLANVPRV-CSRLYNIGSRSHSGPPSPI 333
           NA  +V  N+ R+ CSR YNI  R HS PPS I
Sbjct: 295 NAKLSVFPNLDRLYCSR-YNIPYRRHSLPPSTI 326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,815,427
Number of Sequences: 27780
Number of extensions: 246178
Number of successful extensions: 724
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)