Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_O04
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    29   0.59 
SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyce...    29   0.78 
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa...    29   0.78 
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    27   1.8  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    26   4.2  
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     25   9.6  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   9.6  

>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = -2

Query: 489 LTHLINCLQN*SCSELYWCISKASLNRIKKNKAKFEEMTLDVDIDPVIQMSNFKEIHDEF 310
           + HL+NC  N S   L   +    L  +KK K K +E TL      VI ++ F    D F
Sbjct: 427 IKHLLNCFLNSSTVSLDVSMVLELLRDLKKKKIKVDERTL------VICITIFSRRKDLF 480

Query: 309 QISKI 295
            + KI
Sbjct: 481 AMEKI 485


>SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 152 SRSLCFFILNYLQKFLINFRIHHTADMYYLVVYVFVLEITEIDVANKGP 6
           +R L   +L Y  K+ +N + H T       VY   + +TEI V   GP
Sbjct: 136 ARELAAGMLRYRNKYNLNLQAHDTTIDLIKKVYESGINVTEIYVDTVGP 184


>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 618

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 11/39 (28%), Positives = 27/39 (69%)
 Frame = -2

Query: 432 ISKASLNRIKKNKAKFEEMTLDVDIDPVIQMSNFKEIHD 316
           I +++ ++++K +A+ EE++   D+D V+  S ++E+ D
Sbjct: 152 IIQSAKDKVQKLEAEIEELSTADDVDDVLLESKYEELDD 190


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 176 KASEIYKISRSLCFFILNYLQKFLINFRIHHTADMYY 66
           K S ++ ++R +   I+NYL  F I   +H +   YY
Sbjct: 40  KNSNLFLLNRDIWSLIINYLDAFDILRLMHSSRQFYY 76


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/62 (24%), Positives = 30/62 (48%)
 Frame = -2

Query: 414 NRIKKNKAKFEEMTLDVDIDPVIQMSNFKEIHDEFQISKIIHTEKHRLLY*KFI*LRHVN 235
           + +   K KFEE + + +   ++ +  F  +  EF  +K  H E  ++LY  F+    +N
Sbjct: 319 SHLSSYKEKFEESSKNFEKLVIMSLRVFILVIQEFCNTKSSHPETAQVLYNSFLVDNRIN 378

Query: 234 TI 229
            +
Sbjct: 379 NL 380


>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 56  RQLNNTCQLCGVFGNLLEIFAGSLK*KSIMSER 154
           ++ NN  +LC V GN+L  F  +L+  SI + R
Sbjct: 85  KEENNEEKLCEVNGNMLRNFVQALELTSIQTLR 117


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -2

Query: 381 EMTLDVDIDPVIQMSNFKEIHDEFQISKI 295
           E+++ + +D  + ++NF   +DE  I+K+
Sbjct: 657 EISVQIHVDTNLYVTNFPPTYDELDITKL 685


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,786
Number of Sequences: 5004
Number of extensions: 43126
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)