Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_O04
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0384 + 18409831-18409843,18410378-18410471,18410614-184107...    29   4.3  
10_02_0105 - 5345149-5347833                                           28   5.7  
04_04_1163 - 31398565-31398654,31398729-31398812,31398893-313990...    28   5.7  

>12_02_0384 +
           18409831-18409843,18410378-18410471,18410614-18410734,
           18411635-18412543,18412772-18413211,18413481-18414516
          Length = 870

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 471 CLQN*SCSELYWCISKASLNRIKKNKAKFEEM 376
           CL +  C E Y  + + S NR+K+ + K + +
Sbjct: 157 CLTSSGCQEFYMSVIRGSFNRVKEIQEKLDHL 188


>10_02_0105 - 5345149-5347833
          Length = 894

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 438 WCISKASLNRIK-KNKAKFEEMTLDVDID 355
           WC+  AS  R+K K   + EE  LD+ +D
Sbjct: 697 WCLGIASTKRVKEKETQEHEEYNLDIRVD 725


>04_04_1163 -
           31398565-31398654,31398729-31398812,31398893-31399037,
           31399118-31399239,31399338-31399376,31399491-31399601,
           31399682-31399804,31399946-31400032,31400136-31400207,
           31400349-31400621,31400704-31400895,31400988-31401171,
           31401339-31401480,31401578-31401821,31401959-31402603,
           31403024-31403293
          Length = 940

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -3

Query: 314 NFRFQKLFIQRSTVFCIRNSYN 249
           +F+F + F+ R  VFCIRN++N
Sbjct: 260 HFKFDR-FLARGDVFCIRNNWN 280


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,403,222
Number of Sequences: 37544
Number of extensions: 216368
Number of successful extensions: 365
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)