Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_O04
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56966-10|AAA98722.1|  686|Caenorhabditis elegans Amyloid precur...    31   0.54 
U56966-9|AAK68242.1|  684|Caenorhabditis elegans Amyloid precurs...    31   0.54 
U00240-1|AAC46470.1|  680|Caenorhabditis elegans beta-amyloid pr...    31   0.54 
AF098996-4|AAC68705.1|  888|Caenorhabditis elegans Hypothetical ...    31   0.95 
U40029-15|ABD94114.1| 1824|Caenorhabditis elegans Hypothetical p...    27   8.9  
U40029-14|ABD94112.1| 2025|Caenorhabditis elegans Hypothetical p...    27   8.9  
U40029-13|ABD94113.1| 1884|Caenorhabditis elegans Hypothetical p...    27   8.9  

>U56966-10|AAA98722.1|  686|Caenorhabditis elegans Amyloid
           precursor-like protein1, isoform a protein.
          Length = 686

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -2

Query: 357 DPVIQMSNFKEIHDEFQISKIIHTEKHRLLY*KFI*LRHVNTIEQYYNENKI-ETRGTLR 181
           DP  +++N+   HD+F+ +++   EKHR    K   ++    +E  YNE K  + +G  +
Sbjct: 242 DPYFKIANWTNEHDDFKKAEMRMDEKHRKKVDKV--MKEWGDLETRYNEQKAKDPKGAEK 299

Query: 180 VKGK 169
            K +
Sbjct: 300 FKSQ 303


>U56966-9|AAK68242.1|  684|Caenorhabditis elegans Amyloid
           precursor-like protein1, isoform b protein.
          Length = 684

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -2

Query: 357 DPVIQMSNFKEIHDEFQISKIIHTEKHRLLY*KFI*LRHVNTIEQYYNENKI-ETRGTLR 181
           DP  +++N+   HD+F+ +++   EKHR    K   ++    +E  YNE K  + +G  +
Sbjct: 242 DPYFKIANWTNEHDDFKKAEMRMDEKHRKKVDKV--MKEWGDLETRYNEQKAKDPKGAEK 299

Query: 180 VKGK 169
            K +
Sbjct: 300 FKSQ 303


>U00240-1|AAC46470.1|  680|Caenorhabditis elegans beta-amyloid
           protein precursor protein.
          Length = 680

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -2

Query: 357 DPVIQMSNFKEIHDEFQISKIIHTEKHRLLY*KFI*LRHVNTIEQYYNENKI-ETRGTLR 181
           DP  +++N+   HD+F+ +++   EKHR    K   ++    +E  YNE K  + +G  +
Sbjct: 236 DPYFKIANWTNEHDDFKKAEMRMDEKHRKKVDKV--MKEWGDLETRYNEQKAKDPKGAEK 293

Query: 180 VKGK 169
            K +
Sbjct: 294 FKSQ 297


>AF098996-4|AAC68705.1|  888|Caenorhabditis elegans Hypothetical
           protein T11F1.8 protein.
          Length = 888

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
 Frame = +1

Query: 259 FLIQKTVLLCMNNF*NLKFIMYFFEVGHLNNW----VNVDIKRHFFKFRLILLNPVERSF 426
           +LI+  V +  N+  +L F+    +V   N      V +DI+ ++   RL+LL    R F
Sbjct: 224 YLIKGDVEISRNDIEDLSFLQGLRQVASQNGKGKRRVTMDIRENYGMKRLVLLRQTRRPF 283

Query: 427 *NTPIKFRTR 456
            N P K  +R
Sbjct: 284 HNEPGKLASR 293


>U40029-15|ABD94114.1| 1824|Caenorhabditis elegans Hypothetical
           protein F10G7.10c protein.
          Length = 1824

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -2

Query: 405 KKNKAKFEEMTLDVDIDPVIQMSNFKEIHDEFQI-SKIIHTEKHRL 271
           +KN  +F+E   D  +D +I+ +N  E+  +F I S I H+   R+
Sbjct: 820 EKNLFQFDEKETDEAVDVMIEANNATEVTIDFTIQSPIDHSRDPRI 865


>U40029-14|ABD94112.1| 2025|Caenorhabditis elegans Hypothetical
           protein F10G7.10a protein.
          Length = 2025

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -2

Query: 405 KKNKAKFEEMTLDVDIDPVIQMSNFKEIHDEFQI-SKIIHTEKHRL 271
           +KN  +F+E   D  +D +I+ +N  E+  +F I S I H+   R+
Sbjct: 820 EKNLFQFDEKETDEAVDVMIEANNATEVTIDFTIQSPIDHSRDPRI 865


>U40029-13|ABD94113.1| 1884|Caenorhabditis elegans Hypothetical
           protein F10G7.10b protein.
          Length = 1884

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -2

Query: 405 KKNKAKFEEMTLDVDIDPVIQMSNFKEIHDEFQI-SKIIHTEKHRL 271
           +KN  +F+E   D  +D +I+ +N  E+  +F I S I H+   R+
Sbjct: 820 EKNLFQFDEKETDEAVDVMIEANNATEVTIDFTIQSPIDHSRDPRI 865


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,914,933
Number of Sequences: 27780
Number of extensions: 236289
Number of successful extensions: 529
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)