Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_N23
         (334 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    27   0.99 
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    25   3.0  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    25   3.0  
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    24   7.0  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    24   7.0  
SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo...    24   7.0  
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    24   7.0  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    23   9.2  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    23   9.2  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    23   9.2  

>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 26.6 bits (56), Expect = 0.99
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 92  RQNSQEVSRRNMQSTQQVKYMXRQLGR 172
           +Q +Q+  + N  S QQ++Y+  +LG+
Sbjct: 541 KQRNQKFLKNNATSIQQIQYLDEELGK 567


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 17  NSIAFKIAFWLSISERSKCMGPSRCRQNSQEVSRRNMQST 136
           N I   I   L   ERS+ + PS C + SQ      ++ST
Sbjct: 54  NRIHSAIQMTLCDFERSQILAPSECVRGSQSECVSKLEST 93


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 20  SIAFKIAFWLSISERSKCMGPSRCRQNSQEVSRRNMQSTQQVKYMXRQLGRCRQ 181
           +I  KI   L+I ERS  +     R  S+ +SRR  +  Q++    R+L    Q
Sbjct: 194 AIREKIGRELNIPERSVTIWFQNRRAKSKLISRRQEEERQRILREQRELDSLNQ 247


>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 266 WTRTTKYYSQNADAQSSAGRIHL 334
           WT   K  ++NAD  SS+GRI L
Sbjct: 118 WTPVIK--AENADQLSSSGRIEL 138


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 10/45 (22%), Positives = 25/45 (55%)
 Frame = +3

Query: 198 QRLCGSKRKNSSEQQKFEHVDXSGLVRPSIILKMPMHNHRPAEFI 332
           ++LC  +R+N+ E++   H +  G+  P+   ++ + N    ++I
Sbjct: 190 KKLCIGQRRNAKEERILFHYNGHGVPMPTASGEIWVFNKNYTQYI 234


>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 225 NSSEQQKFEHVDXSGLVRPSIILKMP 302
           ++ +   FE+V+ +GL  P++  KMP
Sbjct: 131 STKQNYNFEYVNVTGLPIPAVWSKMP 156


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 103 AILPTPTRPHTLTS 62
           ++L TPTRPH L++
Sbjct: 281 SVLNTPTRPHALST 294


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
          role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 24 SHSK*PFGCQSANEVSVWGRV 86
          ++SK PFG   ++ +S W R+
Sbjct: 32 NNSKSPFGLNPSSRISQWPRI 52


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 120 RLLTSWLFCLHLLGPIHLLRSLIDNQK 40
           +L + WLF L     ++LL SLI N+K
Sbjct: 5   KLESKWLFSLTESQKLYLLISLIINKK 31


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 276 RPSIILKMPMHN 311
           RPSI+ K P+HN
Sbjct: 182 RPSIVEKFPLHN 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 964,806
Number of Sequences: 5004
Number of extensions: 13445
Number of successful extensions: 36
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)