Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_N20
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    29   0.46 
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    27   3.3  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    25   7.5  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    25   9.9  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -3

Query: 307  GCKPLP*SATLNDPLPFASNFFQHIATSHQPTYLNKTFK 191
            GC PLP  A   D  P     FQ +  +H   YL+K FK
Sbjct: 2286 GCAPLPIFALTADMQPTMETQFQEVGITH---YLSKPFK 2321


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 554 SRYNQCNQVQQCRNPTVLCIQGISFFHFNDE 646
           SRYN C   +   +P     +G  F  F DE
Sbjct: 208 SRYNSCKSAKIMTDPQTNVSRGYGFVRFTDE 238


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 319 LSTAGCKPLP*SATLNDPLPFASNFFQHIATSHQPTY 209
           L  AGCK +       D +PFAS+FF    T+  PT+
Sbjct: 169 LIKAGCKNV---VIRCDDIPFASDFFCSRETNMPPTW 202


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 242 EKIGCER*RIVQCGGLWERFTSSSGEIQADDDDVL 346
           E+I C+  R + CGG W    +    IQ    D +
Sbjct: 52  ERIPCDPVRFMYCGGTWNGIRNHLDYIQGMGFDAI 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,375
Number of Sequences: 5004
Number of extensions: 52838
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)