Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_N18
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    30   0.33 
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    28   1.8  
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    27   2.3  
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    27   4.1  
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    27   4.1  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    26   7.1  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    25   9.4  
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    25   9.4  

>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 228 LIGKAEFAIDKTKYERLVT-YIEAMKNVPAVKSYFL 124
           L+G AEF ++  +YER  T Y E +K+V  V   F+
Sbjct: 406 LVGYAEFLMEHEEYERAATLYAETLKSVEEVALKFI 441


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
 Frame = -3

Query: 762 HLQTGDVLPPYSGKLRVFXMRFCPYAERT-----VLTLNAKNIPYDLVFINLDQKPEWIF 598
           +LQT +VLP  +       +RF PYA  T     ++ ++  NI  DL  +N   K +  F
Sbjct: 454 NLQTANVLPKLAEFRNNNFVRFSPYANITSFRENMINVHLSNIQCDLKDVNYYIKRKQGF 513

Query: 597 -NFSPKGTVPALEYEPGKA--LFDSNIINVYLDEKYPEIPLQASD 472
             F+  G V  L  + G    L  S+  N   + + P+   +  D
Sbjct: 514 PTFTDLGVVDLLIGKQGMVVNLTLSSFSNTMFENELPDSFFKVED 558


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
 Frame = -3

Query: 543 LFDSNIINVYLDEKYPEIPLQASDPLRRAQDKILVESFAPAQSAYYTAAF--NAQALEPS 370
           +F+     V  DE+   + L  S  LR   D++    +    +  Y   F   A+A E +
Sbjct: 140 MFNDAFNEVIEDEEKRVVDLYPSS-LRTKIDELNDYFYDTVNNGVYKTGFATTAEAYEKN 198

Query: 369 MVETYHKGLEGLQKELETRSTKYLHGDEPGWVDYTLWPFLERFE 238
            V    +GL+ L++ L+     +L GD     D  L+  + RF+
Sbjct: 199 -VRVVFQGLDRLEQVLKESKGPFLLGDHLTETDVRLYTTIVRFD 241


>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = -3

Query: 651 IPYDLVFINLDQKPEWIFNFSPKGTVPALEYEPGKALFDSNIINVYLDEKYPEIPLQASD 472
           IP D++F+ +DQK    F  S          +   AL    I+  +LD+++  IP+   +
Sbjct: 237 IPGDVIFV-IDQKEHPRFKRSGDHLFYEAHVDLLTALAGGQIVVEHLDDRWLTIPIIPGE 295

Query: 471 PLRRAQDKIL 442
            +R  + K+L
Sbjct: 296 CIRPNELKVL 305


>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 672 LTLNAKNIPYDLVFINLDQK-PEWIFNFSPKGTVP 571
           L L  +N   D + IN D   P W   FSPK T+P
Sbjct: 91  LHLENQNSIVDSIHINADTVLPVWSEAFSPKSTLP 125


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 24/97 (24%), Positives = 31/97 (31%)
 Frame = -3

Query: 573 PALEYEPGKALFDSNIINVYLDEKYPEIPLQASDPLRRAQDKILVESFAPAQSAYYTAAF 394
           PA   E  K   +S   N   DEK  E PL   +     +             A      
Sbjct: 497 PATNEEVEKNNANSENANGLTDEKIIEAPLDTKENSDDDKPSPAAAEDIGTNGAIEEIPQ 556

Query: 393 NAQALEPSMVETYHKGLEGLQKELETRSTKYLHGDEP 283
            ++ LEP    T +  L  L KE +   T      EP
Sbjct: 557 VSEVLEPEKAHTTNLQLNALDKEEDLNITTVKQSSEP 593


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 660 AKNIPYDLVFINLDQKP 610
           AK + YD +++NL +KP
Sbjct: 3   AKTVQYDNIYLNLSEKP 19


>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 375 PSMVETYHKGLEGLQKELETRSTKYLHGDEPGWVDYTLW 259
           P  V+   +  +  +K++ETR    +  ++PG V Y LW
Sbjct: 37  PRKVKIVKRKKQPARKQIETRPEYEMEPEQPGQV-YNLW 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,139,801
Number of Sequences: 5004
Number of extensions: 62742
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)