Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_N17
(317 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1113 - 24068441-24068923 28 1.4
06_03_1058 + 27254195-27254382,27255041-27255116,27255254-272554... 27 3.2
06_01_0486 - 3455030-3455770 27 3.2
11_03_0044 - 9198016-9199143,9199579-9199674,9199771-9199846,920... 27 4.2
07_03_0437 + 18197454-18197516,18198025-18198078,18198557-18198787 27 4.2
01_06_1377 + 36764461-36765339 27 4.2
11_03_0107 + 10084234-10084348,10084830-10084834,10085351-100858... 26 5.6
05_06_0093 - 25468271-25468320,25468393-25468433,25468592-254686... 26 7.4
06_03_0012 + 15383628-15383823,15383915-15384100,15384326-15385518 25 9.7
05_04_0265 - 19547363-19547401,19547688-19547857,19548451-195486... 25 9.7
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 25 9.7
04_01_0349 - 4570071-4571267 25 9.7
03_05_0395 - 23763531-23764493,23764539-23764708,23764750-237651... 25 9.7
03_01_0180 + 1456182-1456359,1456444-1456520,1456570-1456692,145... 25 9.7
>07_03_1113 - 24068441-24068923
Length = 160
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 175 KKLRCWFWGCLRAWSGQRHGQQSE 246
KK R W WGC G HG++SE
Sbjct: 63 KKQRLWRWGC----GGSPHGEESE 82
>06_03_1058 +
27254195-27254382,27255041-27255116,27255254-27255418,
27255580-27255671,27255713-27255754,27256342-27256387,
27258456-27258683
Length = 278
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 151 DVVQACVWKKLRCWFWGCLRAWSGQRHG-QQSEEN 252
+ ++ C+ + + C WG L+ WS G QQ EN
Sbjct: 173 ECIRPCMSRTISCAAWGELQLWSSLPVGEQQMSEN 207
>06_01_0486 - 3455030-3455770
Length = 246
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = -3
Query: 174 PYTGLDYVYTPGLVPPVISPYASPAAVPITYSALPSAT 61
PY Y P +PP PY P P T +P T
Sbjct: 91 PYVPSPPPYVPPYIPPPTPPYVPPYIPPPTPPYVPPPT 128
>11_03_0044 -
9198016-9199143,9199579-9199674,9199771-9199846,
9200330-9200547,9200703-9200918,9201336-9201521,
9201607-9201708,9201828-9202495,9203248-9203314
Length = 918
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 171 YTGLDYVYTPGLVPPVIS 118
Y GL V+TP L+ PVIS
Sbjct: 78 YVGLSTVHTPALLTPVIS 95
>07_03_0437 + 18197454-18197516,18198025-18198078,18198557-18198787
Length = 115
Score = 26.6 bits (56), Expect = 4.2
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 160 QACVWKKLRCWFWG 201
Q V +K RCWFWG
Sbjct: 21 QGVVKEKNRCWFWG 34
>01_06_1377 + 36764461-36765339
Length = 292
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 144 PGLVPPVISPYASPAAVPITYSALPSATY 58
P PP SPY P P YSA P Y
Sbjct: 160 PQYPPPSSSPYYFPPPPPPAYSAPPPPQY 188
>11_03_0107 +
10084234-10084348,10084830-10084834,10085351-10085803,
10086143-10086267,10087282-10087345,10087452-10087508,
10088475-10088485,10089923-10090802
Length = 569
Score = 26.2 bits (55), Expect = 5.6
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Frame = -3
Query: 168 TGLDYV------YTPGLVPPVISPYASPAAVPIT 85
TGL Y+ YTP L PP +P A+ AA T
Sbjct: 38 TGLGYIVLALQAYTPSLHPPPCNPAATTAAASTT 71
>05_06_0093 -
25468271-25468320,25468393-25468433,25468592-25468653,
25468872-25469057
Length = 112
Score = 25.8 bits (54), Expect = 7.4
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = -3
Query: 162 LDYVYTPGLVPPVISPYASPAAVPITYSA 76
+D +Y ++P V+ P+ S ++ +TY++
Sbjct: 1 MDPLYLSQIIPDVLDPFISTISLRVTYNS 29
>06_03_0012 + 15383628-15383823,15383915-15384100,15384326-15385518
Length = 524
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 183 QLLPYTGLDYVYTPGLVPPVISPYASPAAVP 91
++ PY D PG+V +I +SPA P
Sbjct: 188 KIRPYARKDDFLLPGVVEVIIKSVSSPAIAP 218
>05_04_0265 -
19547363-19547401,19547688-19547857,19548451-19548661,
19549671-19549982
Length = 243
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -2
Query: 202 SPRTSTATSSIHRPGLRLYTRLSTSCDISIRFSGCCPHHLL 80
+PR STAT + PG LYT S+ G +L+
Sbjct: 114 APRASTATKNPAVPGTALYTIFEVQGYASMLLGGALSFNLV 154
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 42 YFNERNKLPMAAQSK*WGQQPEKRMEISQEVLSRVYRRSPGLC 170
++ +++P++ S WG PEK + QE L + P C
Sbjct: 250 FWEAPSRMPLSRSSSGWGDSPEK---LHQECLVHTLFQRPFSC 289
>04_01_0349 - 4570071-4571267
Length = 398
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Frame = -1
Query: 284 SKQTTCPTNSSFSSLCW--PCLW 222
S++ CPT +LCW P LW
Sbjct: 375 SEKIACPTMKGSEALCWIRPNLW 397
>03_05_0395 -
23763531-23764493,23764539-23764708,23764750-23765112,
23765298-23765508,23766214-23766381
Length = 624
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 263 TNSSFSSLCWPCLWPLQALRQ 201
+N S +S CWP L+A+RQ
Sbjct: 264 SNESVNSYCWPLETFLEAMRQ 284
>03_01_0180 +
1456182-1456359,1456444-1456520,1456570-1456692,
1456783-1456896,1457580-1457666,1458040-1458179,
1458253-1458340,1459125-1459198,1461147-1461340,
1461430-1461632,1461955-1462001,1462084-1462336,
1462551-1462568
Length = 531
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 147 TPGLVPPVISPYASPAAVPITYSALPSATYYVR 49
+PG +P +ISP SPA+ + S+ P++T R
Sbjct: 498 SPGTLPTIISPERSPASQAPSRSS-PNSTQVSR 529
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,454,380
Number of Sequences: 37544
Number of extensions: 128483
Number of successful extensions: 505
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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