Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_N16
(383 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha... 73 2e-14
SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosac... 45 4e-06
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 33 0.012
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 28 0.58
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces... 27 0.76
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 27 1.3
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy... 25 3.1
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 24 7.1
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 24 9.4
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 24 9.4
>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 75
Score = 72.5 bits (170), Expect = 2e-14
Identities = 29/55 (52%), Positives = 44/55 (80%)
Frame = -2
Query: 253 SSFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYXNGQLKKXDGXA 89
+ F+ ++ G+ V+++L+SGVDY+G+L+CLDGYMN+ALE+TEEY NG+ G A
Sbjct: 6 NEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDA 60
>SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein
Smf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 78
Score = 45.2 bits (102), Expect = 4e-06
Identities = 19/44 (43%), Positives = 29/44 (65%)
Frame = -2
Query: 247 FIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYXNG 116
F+Q + G+PV+V+L G +Y+G L +D YMN+ L EE +G
Sbjct: 11 FLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDG 54
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 33.5 bits (73), Expect = 0.012
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -2
Query: 250 SFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQ 137
+ + GRP++V+L +G + G L D YMN+ L +
Sbjct: 5 TLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLRE 42
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 27.9 bits (59), Expect = 0.58
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 83 LPCXAIXLFQLSVXIFLGLFQGYIHVSIE 169
LPC L+QLS+ + + L +G++ S+E
Sbjct: 679 LPCSKSSLYQLSLSLCIPLIEGHLRNSLE 707
>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 77
Score = 27.5 bits (58), Expect = 0.76
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -2
Query: 226 RPVVVKLNSGVDYRGVLACLDGYMNIALEQT-EEYXNGQLKKXDGXA 89
R V V+LN GVL D ++NI LE + EE +G+ K A
Sbjct: 15 RQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVKIGSVA 61
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 26.6 bits (56), Expect = 1.3
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -2
Query: 214 VKLNSGVDYRGVLACLDGYMNIALEQTEEY 125
V G + G L DG+MN+ L +EY
Sbjct: 16 VTTKDGRTFVGQLLAFDGFMNLVLSDCQEY 45
>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 3.1
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = -2
Query: 310 LKFHQNNK*TQKMSRKEALSSFIQQIHGRPVVVKLNSGVD 191
L++++ + ++ +SF+ Q HG P K + G+D
Sbjct: 288 LEYYRTGNIIEACAKATVAASFVIQQHGLPAHTKNSEGID 327
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 24.2 bits (50), Expect = 7.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 303 NLRHKVCTMYIK*NKIFQLGQSG 371
N+ K+CT YI+ +F L +G
Sbjct: 1321 NISTKICTKYIQFGNVFNLLHAG 1343
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 23.8 bits (49), Expect = 9.4
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -3
Query: 378 ELTRFDQVEKFC 343
ELT FD+ +KFC
Sbjct: 1148 ELTSFDEADKFC 1159
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 23.8 bits (49), Expect = 9.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 85 ALXRHLSFSAVRXHIPRSVPRL 150
+L + LSF+ + HIP S+ +L
Sbjct: 1311 SLSKDLSFTDISGHIPNSIRKL 1332
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,311,137
Number of Sequences: 5004
Number of extensions: 22023
Number of successful extensions: 51
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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