Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_N16
         (383 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0736 - 19145428-19145474,19145608-19145721,19146707-191478...    62   2e-10
02_01_0576 - 4270808-4270871,4271548-4271612,4271717-4271754,427...    56   1e-08
11_06_0609 + 25444941-25444946,25445678-25445765,25446013-254460...    42   1e-04
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856...    31   0.24 
02_03_0379 - 18331549-18331595,18331676-18331751                       30   0.72 
06_03_1120 - 27765613-27765963                                         26   8.9  

>04_03_0736 -
           19145428-19145474,19145608-19145721,19146707-19147870,
           19150251-19150383
          Length = 485

 Score = 61.7 bits (143), Expect = 2e-10
 Identities = 28/37 (75%), Positives = 30/37 (81%)
 Frame = -2

Query: 199 GVDYRGVLACLDGYMNIALEQTEEYXNGQLKKXDGXA 89
           GV  RG+LACLDGYMNIA+EQTEEY NGQLK   G A
Sbjct: 428 GVTGRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDA 464



 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 18/23 (78%), Positives = 20/23 (86%)
 Frame = -2

Query: 253 SSFIQQIHGRPVVVKLNSGVDYR 185
           S F++ I GRPVVVKLNSGVDYR
Sbjct: 22  SDFLKSIRGRPVVVKLNSGVDYR 44


>02_01_0576 -
           4270808-4270871,4271548-4271612,4271717-4271754,
           4272060-4272147,4272507-4272625,4273682-4273721
          Length = 137

 Score = 55.6 bits (128), Expect = 1e-08
 Identities = 22/45 (48%), Positives = 32/45 (71%)
 Frame = -2

Query: 247 FIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYXNGQ 113
           F+  + G+PV+VKL  G++Y+G L  +D YMN+ L  TEEY +GQ
Sbjct: 62  FLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQ 106


>11_06_0609 +
           25444941-25444946,25445678-25445765,25446013-25446048,
           25446069-25446106,25446219-25446283,25446622-25446685
          Length = 98

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 12/57 (21%)
 Frame = -2

Query: 247 FIQQIHGRPVVVKLNSGVDYR------------GVLACLDGYMNIALEQTEEYXNGQ 113
           F+  + G+PV+VKL  G++Y+            G L  +D YMN+ L  TEEY +GQ
Sbjct: 11  FLNNLTGKPVIVKLKWGMEYKVFRFCLTIDYADGYLVSVDSYMNLQLANTEEYIDGQ 67


>01_01_1089 -
           8560008-8560220,8560456-8560977,8561095-8561283,
           8561377-8561642,8561967-8562111,8562411-8562530,
           8562611-8562930,8564161-8564341,8564434-8564580,
           8565186-8565497,8566303-8566450,8566592-8566765,
           8567385-8567446,8567499-8567571,8567628-8567683,
           8568370-8568645,8569541-8569588,8569870-8569991,
           8570258-8570413,8571037-8571079,8572624-8572701,
           8572972-8573070,8573168-8573209,8573302-8573304
          Length = 1264

 Score = 31.5 bits (68), Expect = 0.24
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 250 SFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQ 137
           S ++   G P++V+L +G  Y G L   D +MNI L +
Sbjct: 5   SLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLRE 42


>02_03_0379 - 18331549-18331595,18331676-18331751
          Length = 40

 Score = 29.9 bits (64), Expect = 0.72
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = -2

Query: 145 LEQTEEYXNGQLKKXDGXA 89
           +EQTEEY NGQLK   G A
Sbjct: 1   MEQTEEYVNGQLKNKYGDA 19


>06_03_1120 - 27765613-27765963
          Length = 116

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 226 RPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEY 125
           R ++V +N G  + G+  C+D   NI L+   EY
Sbjct: 31  RRMLVGVNDGRYFLGLFHCVDKQGNILLQDAVEY 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,957,635
Number of Sequences: 37544
Number of extensions: 126946
Number of successful extensions: 201
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)