Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_N16
(383 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small ... 100 1e-21
AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein. 100 1e-21
AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated Sm-... 100 1e-21
AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein. 100 1e-21
X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein. 55 7e-08
CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein. 55 7e-08
BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear ribonucle... 55 7e-08
BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear ribonucle... 55 7e-08
BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein. 55 7e-08
BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear ribonucle... 55 7e-08
BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small ... 31 1.7
BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small ... 31 1.7
BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small ... 31 1.7
BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small ... 31 1.7
AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein. 31 1.7
AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein. 31 1.7
AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated Sm-... 31 1.7
AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein pr... 31 1.7
CR542157-1|CAG46954.1| 95|Homo sapiens LSM2 protein. 30 2.2
CR542146-1|CAG46943.1| 95|Homo sapiens LSM2 protein. 30 2.2
BC009192-1|AAH09192.1| 95|Homo sapiens LSM2 homolog, U6 small ... 30 2.2
BA000025-11|BAB63302.1| 95|Homo sapiens small nuclear ribonucl... 30 2.2
AL929592-3|CAI18462.1| 95|Homo sapiens LSM2 homolog, U6 small ... 30 2.2
AL671762-3|CAI18212.1| 95|Homo sapiens LSM2 homolog, U6 small ... 30 2.2
AL662834-14|CAI17733.1| 95|Homo sapiens LSM2 homolog, U6 small... 30 2.2
AJ245416-1|CAB52190.1| 95|Homo sapiens G7b protein protein. 30 2.2
AF196468-1|AAG33023.1| 95|Homo sapiens SMX5-like protein protein. 30 2.2
AF182288-1|AAD56226.1| 95|Homo sapiens U6 snRNA-associated Sm-... 30 2.2
AF136977-1|AAG49438.1| 95|Homo sapiens snRNP core SM-like prot... 30 2.2
AF134726-9|AAD21818.1| 95|Homo sapiens snRNP protein. 30 2.2
>BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 80
Score = 100 bits (240), Expect = 1e-21
Identities = 48/60 (80%), Positives = 51/60 (85%)
Frame = -2
Query: 268 RKEALSSFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYXNGQLKKXDGXA 89
RK+ S F++QI GRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEY NGQLK G A
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDA 63
>AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein.
Length = 80
Score = 100 bits (240), Expect = 1e-21
Identities = 48/60 (80%), Positives = 51/60 (85%)
Frame = -2
Query: 268 RKEALSSFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYXNGQLKKXDGXA 89
RK+ S F++QI GRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEY NGQLK G A
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDA 63
>AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated
Sm-like protein LSm6 protein.
Length = 80
Score = 100 bits (240), Expect = 1e-21
Identities = 48/60 (80%), Positives = 51/60 (85%)
Frame = -2
Query: 268 RKEALSSFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYXNGQLKKXDGXA 89
RK+ S F++QI GRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEY NGQLK G A
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDA 63
>AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein.
Length = 80
Score = 100 bits (240), Expect = 1e-21
Identities = 48/60 (80%), Positives = 51/60 (85%)
Frame = -2
Query: 268 RKEALSSFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYXNGQLKKXDGXA 89
RK+ S F++QI GRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEY NGQLK G A
Sbjct: 4 RKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDA 63
>X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein.
Length = 86
Score = 55.2 bits (127), Expect = 7e-08
Identities = 23/46 (50%), Positives = 33/46 (71%)
Frame = -2
Query: 247 FIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYXNGQL 110
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEY +G L
Sbjct: 10 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGAL 55
>CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein.
Length = 86
Score = 55.2 bits (127), Expect = 7e-08
Identities = 23/46 (50%), Positives = 33/46 (71%)
Frame = -2
Query: 247 FIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYXNGQL 110
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEY +G L
Sbjct: 10 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGAL 55
>BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 55.2 bits (127), Expect = 7e-08
Identities = 23/46 (50%), Positives = 33/46 (71%)
Frame = -2
Query: 247 FIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYXNGQL 110
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEY +G L
Sbjct: 10 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGAL 55
>BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 55.2 bits (127), Expect = 7e-08
Identities = 23/46 (50%), Positives = 33/46 (71%)
Frame = -2
Query: 247 FIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYXNGQL 110
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEY +G L
Sbjct: 10 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGAL 55
>BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein.
Length = 86
Score = 55.2 bits (127), Expect = 7e-08
Identities = 23/46 (50%), Positives = 33/46 (71%)
Frame = -2
Query: 247 FIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYXNGQL 110
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEY +G L
Sbjct: 10 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGAL 55
>BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 55.2 bits (127), Expect = 7e-08
Identities = 23/46 (50%), Positives = 33/46 (71%)
Frame = -2
Query: 247 FIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYXNGQL 110
F+ + G+PV+VKL G++Y+G L +DGYMN+ L TEEY +G L
Sbjct: 10 FLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGAL 55
>BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 250 SFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQ 137
S ++ P++V+L +G Y G L D +MNI L +
Sbjct: 5 SLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLRE 42
>BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 250 SFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQ 137
S ++ P++V+L +G Y G L D +MNI L +
Sbjct: 5 SLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLRE 42
>BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 250 SFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQ 137
S ++ P++V+L +G Y G L D +MNI L +
Sbjct: 5 SLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLRE 42
>BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 250 SFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQ 137
S ++ P++V+L +G Y G L D +MNI L +
Sbjct: 5 SLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLRE 42
>AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein.
Length = 139
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 250 SFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQ 137
S ++ P++V+L +G Y G L D +MNI L +
Sbjct: 5 SLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLRE 42
>AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein.
Length = 139
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 250 SFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQ 137
S ++ P++V+L +G Y G L D +MNI L +
Sbjct: 5 SLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLRE 42
>AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated
Sm-like protein LSm4 protein.
Length = 139
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 250 SFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQ 137
S ++ P++V+L +G Y G L D +MNI L +
Sbjct: 5 SLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLRE 42
>AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein
protein.
Length = 139
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 250 SFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQ 137
S ++ P++V+L +G Y G L D +MNI L +
Sbjct: 5 SLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLRE 42
>CR542157-1|CAG46954.1| 95|Homo sapiens LSM2 protein.
Length = 95
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 250 SFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIAL 143
SF + + G+ VVV+L + + G L +D Y+NI L
Sbjct: 5 SFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKL 40
>CR542146-1|CAG46943.1| 95|Homo sapiens LSM2 protein.
Length = 95
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 250 SFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIAL 143
SF + + G+ VVV+L + + G L +D Y+NI L
Sbjct: 5 SFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKL 40
>BC009192-1|AAH09192.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 95
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 250 SFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIAL 143
SF + + G+ VVV+L + + G L +D Y+NI L
Sbjct: 5 SFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKL 40
>BA000025-11|BAB63302.1| 95|Homo sapiens small nuclear ribonuclear
protein D homolog protein.
Length = 95
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 250 SFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIAL 143
SF + + G+ VVV+L + + G L +D Y+NI L
Sbjct: 5 SFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKL 40
>AL929592-3|CAI18462.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.ta 2 protein.
Length = 95
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 250 SFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIAL 143
SF + + G+ VVV+L + + G L +D Y+NI L
Sbjct: 5 SFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKL 40
>AL671762-3|CAI18212.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.ta 2 protein.
Length = 95
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 250 SFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIAL 143
SF + + G+ VVV+L + + G L +D Y+NI L
Sbjct: 5 SFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKL 40
>AL662834-14|CAI17733.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.pha 3 (pseudogene) protein.
Length = 95
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 250 SFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIAL 143
SF + + G+ VVV+L + + G L +D Y+NI L
Sbjct: 5 SFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKL 40
>AJ245416-1|CAB52190.1| 95|Homo sapiens G7b protein protein.
Length = 95
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 250 SFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIAL 143
SF + + G+ VVV+L + + G L +D Y+NI L
Sbjct: 5 SFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKL 40
>AF196468-1|AAG33023.1| 95|Homo sapiens SMX5-like protein protein.
Length = 95
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 250 SFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIAL 143
SF + + G+ VVV+L + + G L +D Y+NI L
Sbjct: 5 SFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKL 40
>AF182288-1|AAD56226.1| 95|Homo sapiens U6 snRNA-associated
Sm-like protein LSm2 protein.
Length = 95
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 250 SFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIAL 143
SF + + G+ VVV+L + + G L +D Y+NI L
Sbjct: 5 SFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKL 40
>AF136977-1|AAG49438.1| 95|Homo sapiens snRNP core SM-like protein
SM-x5 protein.
Length = 95
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 250 SFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIAL 143
SF + + G+ VVV+L + + G L +D Y+NI L
Sbjct: 5 SFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKL 40
>AF134726-9|AAD21818.1| 95|Homo sapiens snRNP protein.
Length = 95
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 250 SFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIAL 143
SF + + G+ VVV+L + + G L +D Y+NI L
Sbjct: 5 SFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKL 40
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,062,972
Number of Sequences: 237096
Number of extensions: 718228
Number of successful extensions: 5636
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 5546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5636
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2583773550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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