Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_N16
         (383 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like ...    95   2e-20
L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear ...    48   2e-06
U20864-9|AAC46661.1|  123|Caenorhabditis elegans Lsm sm-like pro...    30   0.64 
Z81118-7|CAB03328.3|   97|Caenorhabditis elegans Hypothetical pr...    29   1.1  
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical pr...    26   7.9  
AC025726-11|AAY43987.1|  294|Caenorhabditis elegans Hypothetical...    26   7.9  

>AC025726-13|AAK73913.1|   77|Caenorhabditis elegans Lsm sm-like
           protein protein 6 protein.
          Length = 77

 Score = 94.7 bits (225), Expect = 2e-20
 Identities = 42/62 (67%), Positives = 53/62 (85%)
 Frame = -2

Query: 274 MSRKEALSSFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYXNGQLKKXDG 95
           MS+++  + F++++ G+PVVVKLNSGVDYRG+LACLDGYMNIALEQTEEY NGQL+   G
Sbjct: 1   MSKRQNPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYG 60

Query: 94  XA 89
            A
Sbjct: 61  DA 62


>L14429-11|AAA28212.1|   85|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 5 protein.
          Length = 85

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 20/44 (45%), Positives = 29/44 (65%)
 Frame = -2

Query: 247 FIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYXNG 116
           F+  + G+ VV KL  G++Y+GVL  +D YMN+ L   EEY +G
Sbjct: 12  FLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDG 55


>U20864-9|AAC46661.1|  123|Caenorhabditis elegans Lsm sm-like
           protein protein 4 protein.
          Length = 123

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 250 SFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIAL 143
           S ++     P++V+L +G  Y G L   D +MNI L
Sbjct: 6   SLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHL 41


>Z81118-7|CAB03328.3|   97|Caenorhabditis elegans Hypothetical
           protein T10G3.6 protein.
          Length = 97

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 250 SFIQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIAL 143
           SF + + G+ VVV+L + +   G L  +D Y+N+ L
Sbjct: 5   SFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNMKL 40


>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical protein
            C18H2.1 protein.
          Length = 1770

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/58 (20%), Positives = 25/58 (43%)
 Frame = +2

Query: 194  NTAVQFNDNWATVNLLYKRGQSFLTTHFLCLFIILMKFKTQSMYNVH*MKQNFSTWSK 367
            N +++ ++ W+ +   Y     FL         I   F    + N H M+++  +W+K
Sbjct: 1612 NDSIKSDERWSALTENYLHKMDFLLHSTQSKTAINANFSAHDISNEHVMRRDLHSWTK 1669


>Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical
           protein F28F8.3 protein.
          Length = 91

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 244 IQQIHGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYXN 119
           I +  G  + V + +  +  G L   D Y+N+ LE   EY N
Sbjct: 18  IDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYEN 59


>AC025726-11|AAY43987.1|  294|Caenorhabditis elegans Hypothetical
           protein Y71G12B.31 protein.
          Length = 294

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = -2

Query: 247 FIQQIHGR----PVVVKLNSGVDYRGVLACLDGYMN 152
           F+ Q+ GR    P+VV  ++G+   GV  C D  ++
Sbjct: 210 FLLQVRGRQYTSPIVVHCSAGIGRTGVFICTDNVIS 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,301,126
Number of Sequences: 27780
Number of extensions: 126340
Number of successful extensions: 276
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)