Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_N15
         (368 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.09 |pex11||peroxisomal biogenesis factor 11|Schizosaccha...    25   4.9  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   6.5  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    24   8.6  

>SPBC582.09 |pex11||peroxisomal biogenesis factor
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 238

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 256 IFSKPQPFIYACRPYFKSIKLLNIFSSAHTHRP 354
           +FS  +   Y C+ YF S+KL N  S   +  P
Sbjct: 67  LFSIGKVLDYICKVYFDSLKLQNPLSGNKSALP 99


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 71  FTLGSSGLITT*VPLYLLLSPSFFT 145
           F LG   L+ T  P+Y+LLS  + T
Sbjct: 70  FNLGYGWLLLTKYPVYVLLSTYYLT 94


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 208 NFRDLVPSLXELAVQAIFSKPQPFIYACRPYF 303
           NF  L+PS  +++   I  K   F   C P++
Sbjct: 2   NFYSLLPSRHDVSADNITEKFCQFCLCCNPWY 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,383,055
Number of Sequences: 5004
Number of extensions: 23336
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)