Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_N15
         (368 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0676 + 12851218-12851604,12851756-12851800                       28   2.0  
03_06_0251 + 32654223-32654423,32655275-32655589                       27   3.5  

>02_02_0676 + 12851218-12851604,12851756-12851800
          Length = 143

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 121 KVQGYLCGDEAGRPKSEAYTXRSKPETKYIACVVVLR 11
           +  G +  DE GRP       R++ + K+ A ++VLR
Sbjct: 104 RFSGMILYDERGRPVCSGVRDRARDKEKHAAAIMVLR 140


>03_06_0251 + 32654223-32654423,32655275-32655589
          Length = 171

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 87  PASSPHRYPCTFYCLHRSSRNCMLQEHPDQ 176
           PAS PHRY C        +   MLQ+ P Q
Sbjct: 43  PASDPHRYACVQRVFGAGNTARMLQQLPVQ 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,779,794
Number of Sequences: 37544
Number of extensions: 147985
Number of successful extensions: 326
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)