Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_N15
         (368 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110477-20|CAB76740.3|  728|Caenorhabditis elegans Hypothetical...    27   4.2  
Z81113-8|CAO82064.1|  138|Caenorhabditis elegans Hypothetical pr...    26   9.7  
AF068719-4|AAC17780.1|  294|Caenorhabditis elegans Hypothetical ...    26   9.7  

>AL110477-20|CAB76740.3|  728|Caenorhabditis elegans Hypothetical
           protein Y113G7B.18 protein.
          Length = 728

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -2

Query: 166 CSWSIQLREER--WRQ*KVQGYLCGD 95
           C +  +LRE R  WR  KV  Y+CGD
Sbjct: 274 CGFLRELREMREIWRVRKVGDYICGD 299


>Z81113-8|CAO82064.1|  138|Caenorhabditis elegans Hypothetical
           protein T03F6.9 protein.
          Length = 138

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 199 NRLRSCWYWSGCSW 158
           N +RSC Y +GC+W
Sbjct: 70  NTIRSCSYETGCTW 83


>AF068719-4|AAC17780.1|  294|Caenorhabditis elegans Hypothetical
           protein H14N18.2 protein.
          Length = 294

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 311 IDLK*GLQAYINGCGFEKIAWTANSXRDGTRSLKFLP 201
           I+L   L  +IN C ++++    +S RDG     FLP
Sbjct: 55  IELFGSLPLFINQCSYKQLRSYFHSIRDGQHLSIFLP 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,511,518
Number of Sequences: 27780
Number of extensions: 125823
Number of successful extensions: 303
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)