Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_N12
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 200 2e-52
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 109 3e-25
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 89 4e-19
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch... 31 0.16
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 28 1.1
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 28 1.5
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 27 2.5
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 27 2.5
SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|ch... 27 3.4
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 26 5.9
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 7.8
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom... 25 7.8
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 7.8
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 200 bits (488), Expect = 2e-52
Identities = 107/210 (50%), Positives = 147/210 (70%), Gaps = 4/210 (1%)
Frame = -3
Query: 668 FTTXYSSQHSGRKLNWLYNMSKGELLT--NCFKN-RYTLQASTFQMAVLLQYNDNTSWTV 498
F Y S H+GRKL+WL+++SKGE+ N N Y Q ST+QM VLL YN S+T
Sbjct: 561 FQNYYYSCHNGRKLSWLFHLSKGEIKARINPQTNVTYVFQVSTYQMGVLLLYNHRDSYTY 620
Query: 497 RQLEQHTGIKGDFLIQVLQILLKAKLLVCQEDEAELGE-NSVVDLYSGYKNKKLRVNINI 321
+L + TG+ DFL +L I LKAK+L+ +++ +LG+ NS + ++ KK+RV +N+
Sbjct: 621 EELAKITGLSTDFLTGILNIFLKAKVLLLGDND-KLGDPNSTYKINENFRMKKIRVQLNL 679
Query: 320 PLKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLKHQHLVVEVLNQLSSRFKPRV 141
P+++E K E THK IEEDRK+L+Q+AIVRIMK R+TLKH LV E ++Q+ SRF P+V
Sbjct: 680 PIRSEQKQESLETHKTIEEDRKLLLQSAIVRIMKARRTLKHVVLVKETIDQIKSRFTPKV 739
Query: 140 PVIKKCIDILIEKEYLERTEGEKDTYSYLA 51
IK+CID+LIEKEYLER +G +D Y YLA
Sbjct: 740 SDIKQCIDMLIEKEYLER-QG-RDEYIYLA 767
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 109 bits (263), Expect = 3e-25
Identities = 70/216 (32%), Positives = 109/216 (50%), Gaps = 7/216 (3%)
Frame = -3
Query: 677 VHRFTTXYSSQHSGRKLNWLYNMSKGELLTNCFKNRYTLQASTFQMAVLLQYND---NTS 507
+ +FT Y S+H+GRKL W +M ++ N +Y L ST +LL + D N
Sbjct: 570 IDQFTDFYLSKHTGRKLLWYPSMGSADVRVNFKDRKYDLNVSTIASVILLLFQDLKENQC 629
Query: 506 WTVRQLEQHTGIKGDFLIQVLQILLKAKLLVCQEDEAELGENSVVDLY--SGYKNKKLRV 333
++ + T I+ L + LQ L AK + +D N+ Y + + R+
Sbjct: 630 LIFEEILEKTNIEVGDLKRNLQSLACAKYKILLKDPKGREVNAGDKFYFNENFVSNLARI 689
Query: 332 NINIPLKTELK--VEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLKHQHLVVEVLNQLSS 159
I+ +T ++ E++ T + ++E RK A IVR+MK RK +H L+ EV QL+
Sbjct: 690 KISTVAQTRVEDDSERKRTLEKVDESRKHQADACIVRVMKDRKVCEHNQLMAEVTRQLNP 749
Query: 158 RFKPRVPVIKKCIDILIEKEYLERTEGEKDTYSYLA 51
RF P +IK+ I+ LIE+EYL+R Y YLA
Sbjct: 750 RFHPSPMMIKRRIEALIEREYLQRQADNGRIYEYLA 785
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 734
Score = 89.4 bits (212), Expect = 4e-19
Identities = 61/207 (29%), Positives = 102/207 (49%), Gaps = 5/207 (2%)
Frame = -3
Query: 668 FTTXYSSQHSGRKLNWLYNMSKGELLTNCFKNRYTLQASTFQMAVLLQYND---NTSWTV 498
F Y S+ G+K++W ++ + L S FQ VLLQ+N+ +
Sbjct: 526 FEKFYLSKQVGKKISWYASLGHCIVKARFPLGNKELSISLFQACVLLQFNNCLGGEGISY 585
Query: 497 RQLEQHTGIKGDFLIQVLQILLKAKL--LVCQEDEAELGENSVVDLYSGYKNKKLRVNIN 324
+ L++ T + L + LQ L A++ LV + +++ + + +K RV IN
Sbjct: 586 QDLKKSTELSDIDLTRTLQSLSCARIRPLVMVPKSKKPSPDTMFYVNEKFTDKLYRVKIN 645
Query: 323 IPLKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLKHQHLVVEVLNQLSSRFKPR 144
E + E + + DR+ +QA+IVR+MK ++ +KH LV V+N + R P
Sbjct: 646 QIYLKEERQENSDVQEQVVRDRQFELQASIVRVMKQKEKMKHDDLVQYVINNVKDRGIPL 705
Query: 143 VPVIKKCIDILIEKEYLERTEGEKDTY 63
V +K I+ L+EKEYLER + + TY
Sbjct: 706 VSDVKTAIEKLLEKEYLEREDNDIYTY 732
>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 234
Score = 31.1 bits (67), Expect = 0.16
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 308 PSSTVCLYSRAAFCSCTPSRDRQPSSRQAQPRPLDTPTVSP 430
P+STV ++ + SC P+ DR S A R +T T SP
Sbjct: 146 PNSTVLTFTAVPYDSCLPAPDRHTPS-SASSRASETGTTSP 185
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 28.3 bits (60), Expect = 1.1
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = -3
Query: 284 THKHIEEDRKMLIQAAIVRIMKTRKT----LKHQHLVVEVLNQLSSRFKPRVPVIKKCID 117
T KH+EE + I +V+I + +K+ L H ++E N+L + V+ K D
Sbjct: 737 TSKHLEEFSEKFIPKKLVKIPRLQKSYAKGLITGHGIIEDYNRLYKELNDQKEVLIKFRD 796
Query: 116 ILIEKEYLERTEGEKD 69
LI L + E D
Sbjct: 797 RLIHLMKLPLLDQESD 812
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +1
Query: 469 LMPVCCSSWRTVHEVLSLYCSSTAIWNVLACSVYLFLKQLVRSSPLLMLXSQFSLR 636
L+PVCC + + +++ S + WN + + +K V +P++ F+LR
Sbjct: 1115 LLPVCCFLRFMYYFLPTVFSLSGSYWNSIFDYIKYAMKMSVVDAPIVKSFELFALR 1170
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 27.1 bits (57), Expect = 2.5
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = -3
Query: 362 SGYKNKKLRVNINIPLKTELK 300
SGYK+++L ++ ++PL T +K
Sbjct: 1488 SGYKSRRLAIDYSVPLVTNVK 1508
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/52 (23%), Positives = 28/52 (53%)
Frame = -3
Query: 356 YKNKKLRVNINIPLKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLK 201
+++ K + +P T L ++ E T HI ++ + ++++ I+ KTL+
Sbjct: 621 FQSTKSTASFQLPGWTSLGMDLENTKLHIHQEEQRVLKSITDEIVSHHKTLR 672
>SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 125
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 347 CSCTPSRDRQPSSRQAQPRPLDTPTVS 427
C+C P R ++ S R P LDT T+S
Sbjct: 26 CTCFPKRKKEASERSCFPF-LDTETIS 51
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 162 RQLVEDFHH*VLMLQGLARFHYPYYGGLYKHLSVLLNVFV 281
R L+ F V+ L +F Y +YG Y +S L V +
Sbjct: 739 RTLLASFPVVVISLAAYNQFRYFHYGSAYLSMSAALEVMI 778
>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 208 VLRVFIIRTMAACISIFLSSSMCLCVASCSTLSSVF 315
++++ I+ +M ISI LS + +CVA C T+ S++
Sbjct: 254 LIKLLILLSMKKPISILLSQPILICVA-C-TIGSIY 287
>SPBPB2B2.16c |||MFS family membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 208 VLRVFIIRTMAACISIFLSSSMCLCVASCSTLSSVF 315
++++ I+ +M ISI LS + +CVA C T+ S++
Sbjct: 254 LIKLLILLSMKKPISILLSQPILICVA-C-TIGSIY 287
>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 208 VLRVFIIRTMAACISIFLSSSMCLCVASCSTLSSVF 315
++++ I+ +M ISI LS + +CVA C T+ S++
Sbjct: 254 LIKLLILLSMKKPISILLSQPILICVA-C-TIGSIY 287
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,632,843
Number of Sequences: 5004
Number of extensions: 54964
Number of successful extensions: 208
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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