Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_N10
(495 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0848 - 25334701-25334949,25335076-25335184,25335667-253357... 33 0.13
05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610 31 0.51
09_06_0215 - 21621889-21621949,21622275-21622333,21622442-216225... 30 0.89
04_04_1653 + 35070026-35070064,35070358-35070408,35070490-350705... 30 1.2
06_02_0041 + 10889741-10890092,10890161-10890235,10891139-108923... 29 2.7
03_05_0559 - 25610474-25610951,25611149-25611890,25612355-256127... 27 6.3
08_02_0481 + 17636359-17636593,17638136-17638278,17638431-176385... 27 8.3
08_02_0479 + 17627605-17627839,17628965-17629107,17630018-176301... 27 8.3
07_03_0050 + 12817959-12818281,12818604-12818688,12819144-128192... 27 8.3
04_04_0703 + 27398358-27398466,27398549-27398859,27399044-273991... 27 8.3
04_04_0049 - 22356139-22357649,22357764-22357995 27 8.3
>06_03_0848 -
25334701-25334949,25335076-25335184,25335667-25335701,
25335793-25335843,25335941-25336018,25336214-25336351,
25336664-25336729,25337387-25337572
Length = 303
Score = 33.1 bits (72), Expect = 0.13
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 322 WTPPKGHVDPGETDWMTALRETKEEAGLCEDHLDI 218
W P G V+PGE + A+RE KEE G+ + +++
Sbjct: 147 WKFPTGVVEPGEDINLGAVREVKEETGIDTEFVEV 181
>05_02_0108 + 6681656-6681944,6682041-6682183,6682548-6682610
Length = 164
Score = 31.1 bits (67), Expect = 0.51
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -3
Query: 313 PKGHVDPGETD-WMTALRETKEEAGLCEDHLDIYKDINKTLNYEVXRRTQNCCVLVGKA 140
P G V+ G+ D TALRE KEE GL + I + L+ ++ +R + C L ++
Sbjct: 102 PGGKVEEGDADATATALREAKEEIGLDPALVSIVTVLEPFLS-KIVQRNRKCEALANES 159
>09_06_0215 -
21621889-21621949,21622275-21622333,21622442-21622582,
21622669-21622804,21623266-21623342,21623594-21623725,
21624915-21624938,21626147-21626365,21626401-21626718
Length = 388
Score = 30.3 bits (65), Expect = 0.89
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = -3
Query: 448 LCKN*NKIEVMSSLRAAGLVIFRNYNQIIQFLLLQTSYGEHHWTPPKGHVDPGETDWMTA 269
+C + ++ + G ++ + ++ ++ +YG WT P G+++ GE+ A
Sbjct: 217 VCSSCGRVHYENPKMVVGCLVEHDNKVLLCRRKIEPAYGL--WTLPAGYLEVGESAAEGA 274
Query: 268 LRETKEEAGLCED 230
RET EEA C D
Sbjct: 275 SRETLEEA--CAD 285
>04_04_1653 +
35070026-35070064,35070358-35070408,35070490-35070582,
35070758-35070855,35072437-35072551,35072628-35072720
Length = 162
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 322 WTPPKGHVDPGETDWMTALRETKEEAGL 239
W P+G +D GE A RE +EE G+
Sbjct: 26 WQMPQGGIDAGEDPREAAFRELREETGV 53
>06_02_0041 +
10889741-10890092,10890161-10890235,10891139-10892341,
10892970-10893253,10893343-10893459,10894126-10894388,
10894557-10894725,10894838-10895110,10895674-10895718,
10896472-10896591,10896926-10896987,10897296-10897318,
10897911-10898128
Length = 1067
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -1
Query: 168 KTVV-YWLAKLKNPEQTVTLSSEHQDMKWLSLQEAQEISKYEDMR 37
KT++ W A+ PEQ V L E +MK L E+ ED +
Sbjct: 765 KTIMALWKARSLTPEQKVQLVEEESEMKDLQNNESDSFLGIEDAK 809
>03_05_0559 -
25610474-25610951,25611149-25611890,25612355-25612744,
25613041-25613099,25613186-25613326,25613449-25613545,
25614999-25615185
Length = 697
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 65 CASCN-ESHFISWCSDERVTVCSGFLSF 145
C SC HFI C ER T SG++ +
Sbjct: 177 CRSCGVPGHFIQHCQQERKTPPSGYVCY 204
>08_02_0481 +
17636359-17636593,17638136-17638278,17638431-17638550,
17638916-17639116
Length = 232
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -3
Query: 313 PKGHVDPGETD-WMTALRETKEEAGL 239
P G + G+ D TALRE KEE GL
Sbjct: 84 PGGKAEEGDADDAATALREAKEEIGL 109
>08_02_0479 +
17627605-17627839,17628965-17629107,17630018-17630137,
17630497-17630721
Length = 240
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -3
Query: 313 PKGHVDPGETD-WMTALRETKEEAGL 239
P G + G+ D TALRE KEE GL
Sbjct: 84 PGGKAEEGDADDAATALREAKEEIGL 109
>07_03_0050 +
12817959-12818281,12818604-12818688,12819144-12819213,
12819900-12819970,12820417-12820440
Length = 190
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 313 PKGHVDPGETDWMTALRETKEEAGLCEDHLDIYKDINKTLNY 188
P HV D ++ + KE G+ D+Y+D TLNY
Sbjct: 80 PLTHVINLRLDILSFRQNEKESLGVAWARDDLYEDYENTLNY 121
>04_04_0703 +
27398358-27398466,27398549-27398859,27399044-27399109,
27399196-27399258,27399304-27399444,27399535-27399612,
27399688-27399738,27399829-27399863,27399982-27400090,
27400235-27400441
Length = 389
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 322 WTPPKGHVDPGETDWMTALRETKEEAGLCEDHLDI 218
W P G + E + A RE KEE G+ + +D+
Sbjct: 247 WKLPTGFILASEEIFTGATREVKEETGVDTEFVDV 281
>04_04_0049 - 22356139-22357649,22357764-22357995
Length = 580
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 367 IIQFLLLQTSYGEHHWTPPKGHVDPGETDWMTA 269
++ LL+ +G WTP GH +T W++A
Sbjct: 38 VMVVLLMAVLFGAR-WTPSGGHGGGADTSWVSA 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,324,482
Number of Sequences: 37544
Number of extensions: 220477
Number of successful extensions: 548
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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