Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_pT_N09
(678 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 69 5e-12
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 51 1e-06
11_01_0750 - 6315126-6315896,6316371-6316784 49 3e-06
11_02_0012 - 7346282-7347136,7347234-7347593 44 1e-04
11_02_0011 - 7337618-7338496,7338596-7338991 40 0.001
05_06_0044 - 25150322-25151260 35 0.052
01_06_0824 - 32243495-32244319,32244449-32244859 33 0.28
07_01_0464 - 3504264-3504475,3504842-3505031,3505310-3505408,350... 28 7.9
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 68.5 bits (160), Expect = 5e-12
Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 10/205 (4%)
Frame = -2
Query: 677 KFDERLTSDRDXYVSKDKTIKVPMMYKRGDYKYGESAVLNAQLIEIPYK--GD--QSSLI 510
KFD T D + ++ K+++ P M K + N +++++PY+ GD Q S+
Sbjct: 259 KFDASKTKDGEFHLLDGKSVQAPFMST--SKKQYILSYDNLKVLKLPYQQGGDKRQFSMY 316
Query: 509 VVLPKDKDGITQLQEALK-DPKTLETAQQSMYSTEVDLYLPKFKIETETNLKDVLSNMNV 333
++LP+ +DG+ L E L +P+ LE + T LPKFKI D+L ++ +
Sbjct: 317 ILLPEAQDGLWSLAEKLNSEPEFLEKHIPTRQVTVGQFKLPKFKISFGFEASDLLKSLGL 376
Query: 332 NKIFNNDAQITRLL---KGESLSVSEAIQKXXXXXXXXXXXXXXXXXXXXESLSAVISEP 162
+ F+++A +T ++ +G++L VS K SA I+E
Sbjct: 377 HLPFSSEADLTEMVDSPEGKNLFVSSVFHKSFVEVNEEGTEAAAATAAVITLRSAPIAED 436
Query: 161 TVFDANHPFVFFLTGE--GVNLFNG 93
F A+HPF+F + + GV LF G
Sbjct: 437 --FVADHPFLFLIQEDMTGVVLFVG 459
Score = 46.8 bits (106), Expect = 2e-05
Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 11/206 (5%)
Frame = -2
Query: 677 KFDERLTSDRDXYVSKDKTIKVPMMYKRGDYKYGESAVLNAQLIEIPYK--GD--QSSLI 510
KFD T D + ++ ++++ P M R K S+ + +++++PY GD Q S+
Sbjct: 511 KFDVSKTEDGEFHLLDGESVQAPFMSTRK--KQYLSSYDSLKVLKLPYLQGGDKRQFSMY 568
Query: 509 VVLPKDKDGITQLQEAL-KDPKTLETAQQSMYSTEVDLY-LPKFKIETETNLKDVLSNMN 336
++LP+ +DG+ L E L +P+ +E M V + LPKFKI +L +
Sbjct: 569 ILLPEAQDGLWSLAEKLNSEPEFMEN-HIPMRPVHVGQFKLPKFKISFGFGASGLLKGLG 627
Query: 335 VNKIFNNDAQITRLLK---GESLSVSEAIQKXXXXXXXXXXXXXXXXXXXXESLSAVISE 165
+ +F ++ + ++ ++L VS K S+
Sbjct: 628 LPLLFGSEVDLIEMVDSPGAQNLFVSSVFHK---SFIEVNEEGTEATAAVMVSMEHSRPR 684
Query: 164 PTVFDANHPFVFFLTGE--GVNLFNG 93
F A+HPF+F + + GV LF G
Sbjct: 685 RLNFVADHPFMFLIREDVTGVILFIG 710
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 50.8 bits (116), Expect = 1e-06
Identities = 54/205 (26%), Positives = 90/205 (43%), Gaps = 10/205 (4%)
Frame = -2
Query: 677 KFDERLTSDRDXYVSKDKTIKVPMMYKRGDYKYGESAVLNAQLIEIPY-KGD---QSSLI 510
KFD T D + + K++ P M K S+ + +++++PY KG Q S+
Sbjct: 51 KFDASKTKDGEFRLLDGKSVLAPFMST--SKKQYLSSYDSLKVLKLPYQKGRDLRQFSMY 108
Query: 509 VVLPKDKDGITQLQEALK-DPKTLETAQQSMYSTEVDLYLPKFKIETETNLKDVLSNMNV 333
++LP+ +DG+ L L +P+ LE + T LPKFKI D+L + +
Sbjct: 109 ILLPEAQDGLWSLAAKLNSEPEFLEKRIPTRQVTVGKFKLPKFKISFGFEASDLLKILGL 168
Query: 332 NKIFNNDAQITRLL---KGESLSVSEAIQKXXXXXXXXXXXXXXXXXXXXESLSAVISEP 162
F++ A +T ++ + +L VS K SA ++
Sbjct: 169 QLPFSSKADLTGMVGSPERHNLFVSSLFHKSFVQVDEEGTEAAAASAAVVSFRSAPVT-- 226
Query: 161 TVFDANHPFVFFLTGE--GVNLFNG 93
F A+HPF+F + + GV LF G
Sbjct: 227 VDFVADHPFLFLIREDMTGVVLFIG 251
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 49.2 bits (112), Expect = 3e-06
Identities = 49/204 (24%), Positives = 90/204 (44%), Gaps = 11/204 (5%)
Frame = -2
Query: 671 DERLTSDRDXYVSKDKTIKVPMMYKRGDYKYGESAVLNAQLIEIPYKGDQS----SLIVV 504
D R T+++ Y +++VP + + N ++I++PYK ++ S+ +
Sbjct: 190 DLRRTTEQKFYCLDGTSVEVPFVEYDRTRLFAVHD--NFKVIKLPYKQGKNERKFSMYIF 247
Query: 503 LPKDKDGITQL-QEALKDPKTLETAQQSMYSTEVDLYLPKFKIETETNLKDVLSNMNVNK 327
LP D DG+ +L Q+ +P LE + V + +P FKI + ++KD L +M +
Sbjct: 248 LPDDHDGLFELTQKIFSEPMFLEQHLPTE-KCHVGISVPNFKISFQIDVKDFLKDMGLEL 306
Query: 326 IFNNDAQITRLLKGES----LSVSEAIQKXXXXXXXXXXXXXXXXXXXXESLSAVISEPT 159
F +A+ + ++K + L +S+ + K + L A
Sbjct: 307 PFLREAEFSDMIKEDDSSGPLFLSDVLHKAVLEVDQKGIEETSVSMGLGKPLPA-----Q 361
Query: 158 VFDANHPFVFFLTGE--GVNLFNG 93
F A+HPF F + E G +F G
Sbjct: 362 HFKADHPFFFMIREEVSGTVIFMG 385
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 44.0 bits (99), Expect = 1e-04
Identities = 39/194 (20%), Positives = 78/194 (40%), Gaps = 11/194 (5%)
Frame = -2
Query: 662 LTSDRDXYVSKDKTIKV-PMMYKRGDYKYGESAVLNAQLIEIPYKGDQSSLIVVLPKDKD 486
++S D Y+ KV + Y R +G+ + +++ + S+ + LP +D
Sbjct: 194 MSSREDQYIGFYDGFKVLKLPYHRTMKNHGDGGDITPAILKHYGENVGLSMYIFLPDARD 253
Query: 485 GITQLQEALKDPKTLETAQQSMYSTEV---------DLYLPKFKIETETNLKDVLSNMNV 333
G+ L + + + TA S DL +P+FK+ + + +VL M +
Sbjct: 254 GLPALVDKMAVASS-GTASSSFLRDHRPGRRRIKVGDLRVPRFKVSFYSEMNEVLKGMGI 312
Query: 332 NKIFN-NDAQITRLLKGESLSVSEAIQKXXXXXXXXXXXXXXXXXXXXESLSAVISEPTV 156
F+ ++ ++ GE + V + + + + L ++ P
Sbjct: 313 GAAFDVGKVDLSGMIDGELVVVEKVMHRAVVEVNEEGTEAAAATACTMKFLCLTLTSPVD 372
Query: 155 FDANHPFVFFLTGE 114
F A+HPF FF+ E
Sbjct: 373 FVADHPFAFFVVEE 386
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 40.3 bits (90), Expect = 0.001
Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 12/154 (7%)
Frame = -2
Query: 518 SLIVVLPKDKDGITQLQEALKDPKTLETAQQSMYST---EV-DLYLPKFKIETETNLKDV 351
S+ + LP ++DG+ L + + + + + T EV DL +P+FK+ + + V
Sbjct: 263 SMYIFLPDERDGLPALVDKMAASSSSSSFLRDHRPTRRREVGDLRVPRFKVSFYSQINGV 322
Query: 350 LSNMNVNKIFN-NDAQITRLL-----KGESLSVSEAIQKXXXXXXXXXXXXXXXXXXXXE 189
L M V F+ +A ++ + +G L V E +
Sbjct: 323 LQGMGVTAAFDAGEADLSGMAEGVDQRGGGLVVEEVFHRAVVEVNEEGTEAAASTACTIR 382
Query: 188 SLSAVISEPTVFDANHPFVFFLTGE--GVNLFNG 93
LS +S P F A+HPF FF+ E G LF G
Sbjct: 383 LLS--MSYPEDFVADHPFAFFVVEETSGAVLFAG 414
>05_06_0044 - 25150322-25151260
Length = 312
Score = 35.1 bits (77), Expect = 0.052
Identities = 43/211 (20%), Positives = 83/211 (39%), Gaps = 17/211 (8%)
Frame = -2
Query: 674 FDERLTSDRDXYVSKDKTIKVPMMYKRGDYKYGESAVLNA-QLIEIPYK------GDQS- 519
F LT + D +VS D ++VP M + + + ++ + Y+ GD+
Sbjct: 94 FFPHLTEEGDFHVSPDHDVRVPFMAGSHQHAFMDVGCHPGFNVLRMMYRTGGAAGGDKMF 153
Query: 518 SLIVVLPKDKDGITQLQEAL-KDPKTL--ETAQQSMYSTEVDLYLPKFKIETETNLKDVL 348
++ + LP D+DG+ +L L +P T + +L +PKF++ + +L
Sbjct: 154 AMYIYLPDDRDGLPELARKLASNPAAFLRRTIVPAQPVAVGELKIPKFEVSLKVEASRLL 213
Query: 347 SNMNVNKIF----NNDAQITRLLKGESLSVSEAIQKXXXXXXXXXXXXXXXXXXXXESLS 180
++ F +N L + +VS + + +
Sbjct: 214 REFGLDLPFLPAADNSFSGMLLDPPQGTAVSSLLHQCFVNVNEEGTVAAAGTVGEIMGFA 273
Query: 179 AVISEPTVFDANHPFVFFLTGE--GVNLFNG 93
+ F A+HPF+FF+ E G+ +F G
Sbjct: 274 MPDDQIVDFVADHPFLFFIVEEVSGLVVFAG 304
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 32.7 bits (71), Expect = 0.28
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 13/132 (9%)
Frame = -2
Query: 677 KFDERLTSDRDXYVSKDKTIKVPMMYKRGDYKYGESAVLNAQLIEIPY----------KG 528
KFD R TSD Y+ + P M G ++Y + +++ +PY G
Sbjct: 187 KFDARSTSDDVFYLPDGGHVSAPFM-SSGKWQY-IACRAGYKVLRLPYARGGRGRGRDTG 244
Query: 527 DQSSLIVVLPKDKDGI-TQLQEALKDPKTL-ETAQQSMYSTEVDLYL-PKFKIETETNLK 357
S+ + LP ++ G+ L++ DP L E++ V ++ P+F + +TN
Sbjct: 245 RLFSMYIYLPDERHGLPDMLRKLCSDPAALIESSAALTEKVPVGAFMVPRFTLSYKTNAA 304
Query: 356 DVLSNMNVNKIF 321
+ L + + F
Sbjct: 305 ETLRQLGLRLPF 316
>07_01_0464 -
3504264-3504475,3504842-3505031,3505310-3505408,
3505561-3505653,3505926-3506891,3507267-3507485,
3508038-3508247,3508371-3508630,3508956-3510737,
3510796-3511009
Length = 1414
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -2
Query: 449 KTLETAQQSMYSTEVDLYLP-KFKIETETNL 360
K +E A Q +YSTEV+L+ F +ET+T L
Sbjct: 809 KGMEEADQKIYSTEVNLHSQYYFYMETQTAL 839
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,080,519
Number of Sequences: 37544
Number of extensions: 243406
Number of successful extensions: 422
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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