Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_pT_N08
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0379 - 17452525-17452695,17452990-17453325,17453419-174536...    31   1.3  
04_04_1267 - 32257035-32257337,32257423-32257570,32257656-322578...    29   5.4  
01_05_0264 + 20168409-20168593,20168726-20169055,20170142-201706...    28   7.2  

>07_03_0379 -
           17452525-17452695,17452990-17453325,17453419-17453691,
           17453784-17453858,17453951-17454105,17454198-17454314,
           17454394-17454684,17454811-17454859
          Length = 488

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 141 CTHCARNNRITKLYTKIFGV*KYTDTSDPHKK-IWSVEM 254
           CT  A +N IT LY  +FG         P KK +W+ EM
Sbjct: 139 CTAVAISNAITNLYATVFGTCHRLQPLPPEKKAMWNREM 177


>04_04_1267 -
           32257035-32257337,32257423-32257570,32257656-32257893,
           32257994-32258351,32258791-32258969,32259071-32259175,
           32259539-32260871
          Length = 887

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 165 RITKLYTKIFGV*KYTDTSDPHKK 236
           +I K YTKIFG  +Y  + DP  K
Sbjct: 640 KIPKFYTKIFGTLRYLVSEDPASK 663


>01_05_0264 +
           20168409-20168593,20168726-20169055,20170142-20170670,
           20170825-20170958,20171080-20171252,20171274-20171840,
           20172487-20172716,20172954-20172995,20173096-20173224
          Length = 772

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 492 FISSIHKILTLKYYFNPLVSCKHSINHY*IQFNKW 596
           ++++ HK+  ++  FNP + C +  N+    FN W
Sbjct: 570 WLTTYHKLKWMRCGFNPEIKCDYFTNNIAEVFNNW 604


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,334,378
Number of Sequences: 37544
Number of extensions: 326876
Number of successful extensions: 512
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)